Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5893 |
Symbol | nirD |
ID | 7380990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 905294 |
End bp | 905629 |
Gene Length | 336 bp |
Protein Length | 111 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643649412 |
Product | nitrite reductase small subunit |
Protein accession | YP_002547649 |
Protein GI | 222106858 |
COG category | [P] Inorganic ion transport and metabolism [R] General function prediction only |
COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCAGA ACTGGACCTC AATCGGCCAT ATCGACGACA TTCCGCTGCG CGGCGCGCGC TGCGTAAAAA CTCCTCAGGG CAAGATCGCG GTGTTTCGCA CTGCCGAAAA CGAGGTCTTC GCCATCGAGG ACCATTGCCC GCACAAGGGT GGACCGCTTA GCCAGGGCAT CGTCCACGGC AAGGCGGTCA CCTGCCCGCT GCACAATTGG GTGATCTCAC TGGAAAGCGG CAAGGCGCTG GGTGCCGATG AAGGGGCCGT GCGCACGATT GCGGTGCGCA ATGTCGAAGG CATGCTCTCC ATAGCCACGG AAAGCCTGTT GCAGGCGGCG GAGTGA
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Protein sequence | MNQNWTSIGH IDDIPLRGAR CVKTPQGKIA VFRTAENEVF AIEDHCPHKG GPLSQGIVHG KAVTCPLHNW VISLESGKAL GADEGAVRTI AVRNVEGMLS IATESLLQAA E
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