| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5885 |
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| Symbol | |
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| ID | 7380983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 894547 |
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| End bp | 895764 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649405 |
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| Product | ABC transporter substrate binding protein (spermidine/putrescine) |
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| Protein accession | YP_002547642 |
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| Protein GI | 222106851 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.29258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCC ATAACCCACC GGCTTCTTTT CCTGCGCCCG CCCTTCATAC GCAAGGCAAA
CCGCGTCTTC GGGTGCTCGG CACGGCGATT TCCTTGCTGG AACCGTTGCG CGTTCAAGCG
CAGCAGGATC TTGGCATCGA GGTCGTGTTC GACAACAATG ATTTCCTGAC CACCCAGCAC
AAGGCGGCGC AGGCGCCGGA TAGTTACGAC ATCTACGATC AGTGCTTTCA TAACCTGGAC
ATCGTCTGGT ATTGGCGCGC CATCCAGCCG ATAGAACTGA AGCGGATCGA CCTCTGGAAC
GAGATTTCCG ATCTCACCAA GACCGGACGA CTGGAGTCGA GTGCCCAACT GGGTAAGGGC
GATGCACCTG TCAAGAAACT GTTCGTTCAG CCGGACCTGT CGCTGGGCGA TAATCCGACC
GGCCATATTT CCATGTTGCC CACCACCCAT AATTTCGACA GTTTTGCCTA TCGCAGCGAT
CTGGTGAAAA GCCCCAGGTC CGTGTCCAGT TGGGCAAGTC TGTTGGACGA GACCTGGGCG
GGCCGGGTGG CCCTGATTGA CGAGCCCGCC ATCGGTATTT TCGATGCAGC TCTTGCTGCC
GAGGCGGCTG GCCTGATGCG GTTCGAGAAT ATCGGCAATA TGACCGTGGC TGAGATCGAC
CGGCTGATCG CCATTCTGAC CGAGAAGAAA AAGTCCGGAT TTTTCAGGGA CTTCTGGCGC
ACCGCCGAGG ATGCCGCGGC CCTGATGGTC CGGGGCCGTA CCGATATCCA GAGCATGTGG
TCCACAGGCA TTACCATCTT GAGCGGTCAG GGCATGGCCG TGGAGCAGGC GGTGCCGGTC
GAAGGCTACA GGGCCTGGCA TGGCGGGCTT TGCCTGTCGC GTGGCCTTGA AGGCCGGATG
CTGGATGTGG CCTATGACTA TCTTAACTGG TGGATTTCCG GGTTGCCAGG TGCTGTCGTT
GCGCGGCAAG GCTATTACAT CTCCACGCCG CAGCGCTCAA AGGCGTATCT GAGCAAGGCG
GAATGGGATT ATTGGTATGG CGGCCTGCCC GCCGCGCAGG ACTTGCCCGG ACCCGATGGC
GCAATGCGGA TCAAGGCTGG CGAAAGCCGC AGCGGCGGGT CCTACTGGCA GCGTGCCAAC
CGCATCGCGG TGTGGAACAC CACCATGGAC GAGCATAATT ATCTGGTGCG TCGCTGGCTT
CAGCTGATGG CGGCGTAA
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| Protein sequence | MNTHNPPASF PAPALHTQGK PRLRVLGTAI SLLEPLRVQA QQDLGIEVVF DNNDFLTTQH
KAAQAPDSYD IYDQCFHNLD IVWYWRAIQP IELKRIDLWN EISDLTKTGR LESSAQLGKG
DAPVKKLFVQ PDLSLGDNPT GHISMLPTTH NFDSFAYRSD LVKSPRSVSS WASLLDETWA
GRVALIDEPA IGIFDAALAA EAAGLMRFEN IGNMTVAEID RLIAILTEKK KSGFFRDFWR
TAEDAAALMV RGRTDIQSMW STGITILSGQ GMAVEQAVPV EGYRAWHGGL CLSRGLEGRM
LDVAYDYLNW WISGLPGAVV ARQGYYISTP QRSKAYLSKA EWDYWYGGLP AAQDLPGPDG
AMRIKAGESR SGGSYWQRAN RIAVWNTTMD EHNYLVRRWL QLMAA
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