| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5880 |
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| Symbol | |
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| ID | 7380650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 889516 |
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| End bp | 890829 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649400 |
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| Product | ABC transporter substrate binding protein (spermidine/putrescine) |
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| Protein accession | YP_002547637 |
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| Protein GI | 222106846 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.316901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGCGCTA CTGACAGGAA CAATCAACAA CAACAAAAAC CGGCAAAGCC GGATCGGGAA
CTCAAAAACT GGAGAACTGC CATGTCATTA CTCGAATTAA ACCGCAGATC GCTTCTCAAA
CGCTCCACCG GCATGATGGC GCTGGCCATG GGGGCGGGGA CACCCTTCCT CTCGTCGCGG
GCGGCCTATG CCCAGGCAAC CAGCCTTGCC AGCCAGCAGC TCCGCACCAT CGGCCTTTCG
GTGACGGTGC AGGAACGCAT TCTCAATGAC TTCAAGAAAG CCTCCGGCGT CGGTGGCACA
TCCGGCACGG CGGCAACCTT CCCGGATGCG CAGACCAAGA TCCTGTCTGG CTCGAAAGAT
TACGATTGCT GGGAAATCAT CGCCGAGCGC CTGCCTGCCA TCGTCATGAC CAACAATGTC
GAGCCCGTAC CGGCCTCCGG CTTGAAAAAT TGGGCGAATA TCCGCGACAC CTTCACCAAG
CCATCCGACA AATGGGACTT GAAGGCGCAG ATCGTTGGAC AGATCTGGGC TGATGAAGGA
CAGACGACAC TGAACATGGT GCCAGCCGTC TATAACTACG ATTCCATCGG TTATAACCCG
GATGTTGTCT CCGCCGAAGA GGCCAATAGC TGGGCGGCGA TTTTCGACAA GAAGTGGAAG
GGCAAGTCCG GCCTCAACAC CGATCCGCTG ATTGCCTTTG GTCAGGCGAT CATGGCGATG
AACACGCTTG GCCTGCTCAA CGTCAAGAAC CCCGGCAATC CAAGCGCCAA GGAAATCGAC
GAGGCCGCCG CCTTCCTGGT GTCGAAGAAG AAAGAAGGTC AGTTCCGGGC ACTGTGGGGT
GATTTCGGCG AACTGGTCAA CCTGATGGCC TCAGGCGAAA TGGTGGTTTG CGATGCCTGG
CAGCCTGCGG TCATGGCGGT GAAGGCGCAG GGCAAGTCTT GCAAATATGC GGTGCCGAAG
GAAGGCTACC GCGCCTGGGC CATCGGGCCG TCGATGATTG CAGGCACCAC CAACAAGGAA
GCCGTCACCG CCTATGCCGA TTACTGGCTG TCTGGCGAGC CGGGCATTGC CGTGTCGGAG
CAGGGCTATT ACTCGCCCTC CACCAATATC AAAAGCGTCA TGGCACCGGA AAAATATGCC
TTCTGGTACG AGGGCAAGCC TTGGACCGGC GCGCCGGAGC GCGGCATCAA GGAAGGCGAC
CTGCGCGATG GCGGCTCGCT GGAAGAGCGC GCCAAAAACG TCGCTTATTG GCATCAATGG
CCGGATGAAT ACGACCATCT GGTGCAGAAG TGGGACGAGT TCCTGAACGC CTGA
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| Protein sequence | MGATDRNNQQ QQKPAKPDRE LKNWRTAMSL LELNRRSLLK RSTGMMALAM GAGTPFLSSR
AAYAQATSLA SQQLRTIGLS VTVQERILND FKKASGVGGT SGTAATFPDA QTKILSGSKD
YDCWEIIAER LPAIVMTNNV EPVPASGLKN WANIRDTFTK PSDKWDLKAQ IVGQIWADEG
QTTLNMVPAV YNYDSIGYNP DVVSAEEANS WAAIFDKKWK GKSGLNTDPL IAFGQAIMAM
NTLGLLNVKN PGNPSAKEID EAAAFLVSKK KEGQFRALWG DFGELVNLMA SGEMVVCDAW
QPAVMAVKAQ GKSCKYAVPK EGYRAWAIGP SMIAGTTNKE AVTAYADYWL SGEPGIAVSE
QGYYSPSTNI KSVMAPEKYA FWYEGKPWTG APERGIKEGD LRDGGSLEER AKNVAYWHQW
PDEYDHLVQK WDEFLNA
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