| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5877 |
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| Symbol | |
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| ID | 7380648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 887993 |
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| End bp | 888742 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649398 |
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| Product | short chain fatty acid oxidoreductase |
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| Protein accession | YP_002547635 |
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| Protein GI | 222106844 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.395109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGAAA AGTCTGCTTT CCCTTCTGCT ATTGTCACCG GAGCGGGTTC CGGCATCGGG
CGAGCCATTG CACTCCGGCT GGCAAAAGAC GGGTATGGCG TGTTGGTCAA CGATCTTGCC
ATCGACCGTG CGAACGCTGT CGCCGATGAG ATTGTGGCGT CGGGCGGCAA GGCCTCGGCC
TATGCCGGTG ACGTCTCCCA CGAGACAGAA GCGGCCGCCA TTTGCGCTGC CGCTGTCGTC
GCCCATGGGC CGGTGGCGCT GTTGGTCAAC AATGCGGGGA TCGCCCATCA ATCGCTGTTT
GAGCATCTTG AAGTCGCTGA TTTCGACCGG ATGTTTGCAG TGCATGTGCG CGGTAATTTC
CTGATGACCC GCGCCGTGTT ACCTCCGATG CTGGAGCGGG GAGACGGCGT GATCGTCAAT
ATTGCCTCGC AGCTTGGCCA GATCGGTGGC GTCGAACTGG TGCATTATTC CGGCGCAAAG
GCAGCCATTA TCGGCATGAC CAAGGCACTT GCCCGTGAAG TCTCCTCCCG TGGCGTGCGT
GTCAATGCGG TTGCTCCCGG CCCAATCAAT ACGCCGCTGG TCATGGGCCT TTCGGAAGAC
TGGCGGAATG CCAAGCGAGC CCAATTGCCG CTTGGCCGGT TCGGCGAACC GGAGGAAGTG
GCCGCCGCCG TCTCCTTCCT TGCCTCCCCG GATGCCGCCC TGTTCGTCGG CCAGACACTG
GGGCCGAATT CCGGCGATGT GATGCTTTGA
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| Protein sequence | MMEKSAFPSA IVTGAGSGIG RAIALRLAKD GYGVLVNDLA IDRANAVADE IVASGGKASA
YAGDVSHETE AAAICAAAVV AHGPVALLVN NAGIAHQSLF EHLEVADFDR MFAVHVRGNF
LMTRAVLPPM LERGDGVIVN IASQLGQIGG VELVHYSGAK AAIIGMTKAL AREVSSRGVR
VNAVAPGPIN TPLVMGLSED WRNAKRAQLP LGRFGEPEEV AAAVSFLASP DAALFVGQTL
GPNSGDVML
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