| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5876 |
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| Symbol | |
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| ID | 7380647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 887151 |
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| End bp | 887996 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649397 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002547634 |
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| Protein GI | 222106843 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.413281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCCG GAGCGGTCAA ACTGGGACTT TGCGTCTATA CCACGCTGTT TCTGGTGTTT
CTCTACGGGC CTTTGGTGGT TCTCGCCATC CTGTCCTTCC AGACGGGACC GGAAGGCGGT
CCGCAATTTC CGATCATCGA ATGGTCGGTC TATTGGTACA AGCACCTGTT CGGCCTGACG
CCGCCCTCGC GCATTGCGCC ACTGCCGATC AACGATGCCT TGGTGCGGTC CATGGGGCTG
GCGGTGATGA CGATGATCGT CTCCACCGTG CTGGGGGTTA TTTCGGCGCA GGCCTTTCGC
AGCCGGTTCA AAGGCTCCGG CCTGGTCTTC TACCTGATCG TGCTGGGTAT GATGGTGCCG
GGTGTGCTGG TCGGGCTTGG CATGGCGCTG GTTGCCAATA CACTGGGCAT CGACCGGCAC
TGGTGGGGTA CCGCCTTCGT GCTGCATGTG GTCTATACCT TCCCCTTTGC CTTCCTGGTG
ATGCTGGCGA TTTTCAATCG CTTCGACCCA AGCGTCGAGG AAGCGGCCTG GTCGCTTGGC
GTCAGCCCGA TGCGGACGTT TCGCAAGATC ACCTTTCCAC TGATCTTTCC GGGCGTGCTG
TCGGCCATGC TGTTTGCCTT CACGCTGTCC TATGACGAGT TTTCCCGCAC GCTGTTTGCC
TCTGGCCGCG ATCTCACTTT GCCGCTGGCG ATCTATGGAA CGTTTTCGGT GGAAGTCCAT
CCGAATGTCT TTGCCTTCGG CGTGCTGACC ACGCTGTTTT CCTTCGCGCT GCTTGGCACT
TACGCCGTGC TGATGGGGCT TTCAGTGCGC CGCGCCCGGC GCATCGCCGT GCAGGAGGAT
GCATGA
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| Protein sequence | MNSGAVKLGL CVYTTLFLVF LYGPLVVLAI LSFQTGPEGG PQFPIIEWSV YWYKHLFGLT
PPSRIAPLPI NDALVRSMGL AVMTMIVSTV LGVISAQAFR SRFKGSGLVF YLIVLGMMVP
GVLVGLGMAL VANTLGIDRH WWGTAFVLHV VYTFPFAFLV MLAIFNRFDP SVEEAAWSLG
VSPMRTFRKI TFPLIFPGVL SAMLFAFTLS YDEFSRTLFA SGRDLTLPLA IYGTFSVEVH
PNVFAFGVLT TLFSFALLGT YAVLMGLSVR RARRIAVQED A
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