Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5843 |
Symbol | nspC |
ID | 7380624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 862274 |
End bp | 863371 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643649374 |
Product | carboxynorspermidine decarboxylase |
Protein accession | YP_002547611 |
Protein GI | 222106820 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.883697 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTTCAGA CCCCGTTTTA TCTCATCGAC AAGAGCAAGC TCCTTTCCAA TATGGAAAAG ATCGCGCTTC TGCGCGAGAC CTCCGGTGCC AAGGCGCTGC TGGCGTTAAA ATGTTTTGCC ACCTGGTCGG TGTTCGACCT GATGCGCGAC TATATGGATG GCACCACCTC GTCCTCGCTT TACGAAGTCC GGCTCGGCCG CGAGAAATTC GGCGGCGAGA CCCATGCCTA TAGCGTTGCC TATGGCGACA ATGAAATTGA TGAGGTGATT TCACACGCCG ACAAGATCAT CTTCAATTCG GTCGGCCAGT TGGAGCGCTA TGGCGACAAG GCCTCCGGCA TTACCCGCGG CTTGAGGCTG AACCCCCAGG TCAGCTCGTC CAGCTTTGAC CTAGCCGATC CGGCCCGGCC GTTTTCGCGG CTTGGGGAAT GGGATGCGGC CAAGGTGGAA AAGGTCATGG ATCGGATCAG CGGCTTCATG ATCCATAACA ATTGCGAAAA CAAGGATTTC GCGCTGTTTG ACAGCATGCT CTCGGACATC GAGGCGAAAT TCGGCTCGCT GCTGCATCGT GCCGAATGGG TCAGCCTCGG TGGCGGTATT CACTTTACCG GAGAAGATTA TCCGCTGGCG CAGTTCGCCG AGCGGTTGAA GCGGTTTTCA GGCGAATACG GCGTTCAGGT CTATCTGGAG CCAGGTGAGG CCTCGATCAC CAAATCAACG ACGCTGGAAG TCTCGGTTCT GGATACGCTG TATAATGGCA AGAACCTCGC CATTGTCGAT AGTTCCATCG AGGCGCATAT GCTCGATCTG CTGATCTACC GCGAAACCGC CAAACTGGAG CCGAATGCAG GTGACCACAG CTATATGATT TGCGGCAAAT CGTGCCTGGC AGGCGATGTA TTTGGCGAGT TTCGTTTCCC TGAAGCCTTG AAGGTCGGCG ACCGGATTTC CATCCAGGAT GCCGCAGGCT ATACGATGGT CAAGAAGAAC TGGTTTAACG GCGTGAAAAT GCCGTCCATC GCCATCCGTG AACTGGATGG CAGCATCAGG ACTGTCCGCG AGTTTTCCTA CGCGGACTTT GAACAAAGCC TCTCTTGA
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Protein sequence | MLQTPFYLID KSKLLSNMEK IALLRETSGA KALLALKCFA TWSVFDLMRD YMDGTTSSSL YEVRLGREKF GGETHAYSVA YGDNEIDEVI SHADKIIFNS VGQLERYGDK ASGITRGLRL NPQVSSSSFD LADPARPFSR LGEWDAAKVE KVMDRISGFM IHNNCENKDF ALFDSMLSDI EAKFGSLLHR AEWVSLGGGI HFTGEDYPLA QFAERLKRFS GEYGVQVYLE PGEASITKST TLEVSVLDTL YNGKNLAIVD SSIEAHMLDL LIYRETAKLE PNAGDHSYMI CGKSCLAGDV FGEFRFPEAL KVGDRISIQD AAGYTMVKKN WFNGVKMPSI AIRELDGSIR TVREFSYADF EQSLS
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