Gene Avi_5843 details

Gene Information

• Locus tag: Avi_5843
• Symbol: nspC
• ID: 7380624
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 862274
• End bp: 863371
• Gene Length: 1098 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643649374
• Product: carboxynorspermidine decarboxylase
• Protein accession: YP_002547611
• Protein GI: 222106820
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0019] Diaminopimelate decarboxylase
• TIGRFAM ID: [TIGR01047] carboxynorspermidine decarboxylase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.883697
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTTCAGA CCCCGTTTTA TCTCATCGAC AAGAGCAAGC TCCTTTCCAA TATGGAAAAG 
ATCGCGCTTC TGCGCGAGAC CTCCGGTGCC AAGGCGCTGC TGGCGTTAAA ATGTTTTGCC 
ACCTGGTCGG TGTTCGACCT GATGCGCGAC TATATGGATG GCACCACCTC GTCCTCGCTT 
TACGAAGTCC GGCTCGGCCG CGAGAAATTC GGCGGCGAGA CCCATGCCTA TAGCGTTGCC 
TATGGCGACA ATGAAATTGA TGAGGTGATT TCACACGCCG ACAAGATCAT CTTCAATTCG 
GTCGGCCAGT TGGAGCGCTA TGGCGACAAG GCCTCCGGCA TTACCCGCGG CTTGAGGCTG 
AACCCCCAGG TCAGCTCGTC CAGCTTTGAC CTAGCCGATC CGGCCCGGCC GTTTTCGCGG 
CTTGGGGAAT GGGATGCGGC CAAGGTGGAA AAGGTCATGG ATCGGATCAG CGGCTTCATG 
ATCCATAACA ATTGCGAAAA CAAGGATTTC GCGCTGTTTG ACAGCATGCT CTCGGACATC 
GAGGCGAAAT TCGGCTCGCT GCTGCATCGT GCCGAATGGG TCAGCCTCGG TGGCGGTATT 
CACTTTACCG GAGAAGATTA TCCGCTGGCG CAGTTCGCCG AGCGGTTGAA GCGGTTTTCA 
GGCGAATACG GCGTTCAGGT CTATCTGGAG CCAGGTGAGG CCTCGATCAC CAAATCAACG 
ACGCTGGAAG TCTCGGTTCT GGATACGCTG TATAATGGCA AGAACCTCGC CATTGTCGAT 
AGTTCCATCG AGGCGCATAT GCTCGATCTG CTGATCTACC GCGAAACCGC CAAACTGGAG 
CCGAATGCAG GTGACCACAG CTATATGATT TGCGGCAAAT CGTGCCTGGC AGGCGATGTA 
TTTGGCGAGT TTCGTTTCCC TGAAGCCTTG AAGGTCGGCG ACCGGATTTC CATCCAGGAT 
GCCGCAGGCT ATACGATGGT CAAGAAGAAC TGGTTTAACG GCGTGAAAAT GCCGTCCATC 
GCCATCCGTG AACTGGATGG CAGCATCAGG ACTGTCCGCG AGTTTTCCTA CGCGGACTTT 
GAACAAAGCC TCTCTTGA 

 

Protein sequence

MLQTPFYLID KSKLLSNMEK IALLRETSGA KALLALKCFA TWSVFDLMRD YMDGTTSSSL 
YEVRLGREKF GGETHAYSVA YGDNEIDEVI SHADKIIFNS VGQLERYGDK ASGITRGLRL 
NPQVSSSSFD LADPARPFSR LGEWDAAKVE KVMDRISGFM IHNNCENKDF ALFDSMLSDI 
EAKFGSLLHR AEWVSLGGGI HFTGEDYPLA QFAERLKRFS GEYGVQVYLE PGEASITKST 
TLEVSVLDTL YNGKNLAIVD SSIEAHMLDL LIYRETAKLE PNAGDHSYMI CGKSCLAGDV 
FGEFRFPEAL KVGDRISIQD AAGYTMVKKN WFNGVKMPSI AIRELDGSIR TVREFSYADF 
EQSLS