Gene Avi_5689 details

Gene Information

• Locus tag: Avi_5689
• ID: 7381578
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 712340
• End bp: 714415
• Gene Length: 2076 bp
• Protein Length: 691 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649250
• Product: hypothetical protein
• Protein accession: YP_002547487
• Protein GI: 222106696
• COG category: [S] Function unknown
• COG ID: [COG1289] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.33226
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGCAC CAACCTGGAG AGACTGGGTG TTTTCCGGCA AGGCTTTTGC GGCTGCCATG 
CTGGCCCTTT ATCTTGCCCT GATGTTTGAT CTGTCGCGGC CCTATTGGGC TGTTTCGGCG 
GTCTATATCG TTTCCAATCC CTTTGCGGGC GCAACCAAAT CCAAGGCGCT GTACCGTGTG 
CTTGGCACAT TGCTGGGTGC AAGTGCTGCG GTTTTGTTCG TGCCGGTCTT CGTCAATGCC 
CCGGAGCTTT TATCTCTGGT CGTGGCGCTC TGGACCGGAA CTCTGTTGTT TTTGTCGATG 
CTCGACCGTT CGGCGCGTGC CTATGTTTTC ATGTTGGCCG GTTACACGCT GCCGCTGATC 
GCCCTGCCCA GCGTCAGTGA TCCCGGCGGC GTTTTCGATG TCGCGCTGGC GCGGTCCGAG 
GAAATTACCC TGGGCATTTT ATGCGCCACG CTCGTCAATC AGGTGGTGTT TCCCTCCAGC 
ATCGGTCGCT TGTTTGGGGA CAGGATCAAT GTTTGGCTGG CCGATGCTGG TGCCTGGGCC 
GAAGATATTT TGCGCGGCGA AGGTGCCATA CCGTCCACCC CGCTGAAACG TCAGCAATTG 
GCCTCTGACG TGTCCAGTCT TGACCTGATG ATCAGTCAGT TGAGTTACGA TCCGGGAACC 
AAGGATGTCG TTGGTCAGGC GCGGGAGCTT CGTGGCCGGC TTTTGATGCT GCTGCCAGTA 
TTTTCATCGC TGGCAGACCG CCTGCATGCC GTCAAACAGC AATCCGGCCT GGATGACACC 
CTCATCGCAC TGCTCAATGA TATCGCCGAT TGGTTCAAGC TGGGTGGCGG CGTCGAGACG 
GAAAAGGCTG GCGCCAGCCT GCTGGCTCGG ATCAACACCA TGCAGAAGCA GGATAAGCCG 
CATGGCTGGG ATGATCTCGT CATGTCCAGC CTGCTGACCC GGCTGAAGGA TGTCGTTGAA 
CTCTGGCAGG ATTGCCTGAC GCTGCGCGAT CACATCGCTA GCGGCGGCCA TGCGGCGGAG 
ACTTTGCCGC TCCTGCACAC CAGGCGTATC TTGGCGGGCT CACGGCATTT CGACCATGCA 
TTGCTCGCCA TGAAAGTGGC CGTTGTGGTG GTGGGCATTC TATTGGCCTG CGCATTCTGG 
ATTGCCAGCG GCTGGAGCCA GGGCGCGAGT TTCGTTTCCA TGGTCGCGGT GTCCTGTTCG 
TTTTTCGCCG CCCAGGACCG GCCTGCGCCG ATGATCCGCA AAATGCTGAT CTGGACTGCC 
CTGTCGATTG TGGTGGCCTT TGTCTATCTC TTTGCCATTC TTCCGGCCGT CACGTCCTTC 
GAAATGCTGG TGCTGACGCT GGCGCCGATG TTCCTGTTCA TCGGGTTGAA GATGAGCAAT 
CCGCAAATGG GGATGTTTTT CATGCTGCTG GCAGTCAACA GTGCCACGCT GATCGCCATT 
CAGGACCAGT ATTCCGCCGA TCTGACCAGC TTTGCCAATG GCGGGCTGGC CACCTTGCTC 
GGTATTGGTT TTGCCCAACT CTGGGTCACC GTCGCCCAGC CTTTCGGGGC TGAACTGGCG 
GCTCGGCGAC TGATGAAATC TGGGTGGCGC GATCTTGCCG ATACGGCTTC CGGATCACGG 
TCGGGAGATG TCGACCGCCT TTCCAGCCGC AGTCTCGACC GGCTTGGGCA GCTTGTCCCG 
CGGTTGGCGG CATTGAATGT GCGCGATCTC GGCGATGTCG ATGGCTTTGC CGATGTCCGG 
CTCGGGTTCA ACGTGGTGAC GCTGCAACAA CAGCGGCCGT CGCTTGGGCA GGAAAGCGGT 
ACGCTCATCT CACAGGTTCT TGCTGGCATT GCAGACCATT ATCGGCGTCG GTTGAAGCTT 
GGTGGCTCAA GCCCGGCGCA GCCGCAATTG CAGGACACCA TCGACAGGGC GCTCGAGACG 
GTGATGCGCA ACGAGGGCGA TGTCGGGCGC CGTGTGACCG ACGCATTGGT CGGCCTCAGG 
CGCGTGCTGT TTGGTCAATC GCCACCGCCA AGCCTTTCCC CGCAGGCCGG TGGTTCGCAG 
TCCGGCGCCC ACCAACTTTC TTTCGCAGCA GAGTAA 

 

Protein sequence

MVAPTWRDWV FSGKAFAAAM LALYLALMFD LSRPYWAVSA VYIVSNPFAG ATKSKALYRV 
LGTLLGASAA VLFVPVFVNA PELLSLVVAL WTGTLLFLSM LDRSARAYVF MLAGYTLPLI 
ALPSVSDPGG VFDVALARSE EITLGILCAT LVNQVVFPSS IGRLFGDRIN VWLADAGAWA 
EDILRGEGAI PSTPLKRQQL ASDVSSLDLM ISQLSYDPGT KDVVGQAREL RGRLLMLLPV 
FSSLADRLHA VKQQSGLDDT LIALLNDIAD WFKLGGGVET EKAGASLLAR INTMQKQDKP 
HGWDDLVMSS LLTRLKDVVE LWQDCLTLRD HIASGGHAAE TLPLLHTRRI LAGSRHFDHA 
LLAMKVAVVV VGILLACAFW IASGWSQGAS FVSMVAVSCS FFAAQDRPAP MIRKMLIWTA 
LSIVVAFVYL FAILPAVTSF EMLVLTLAPM FLFIGLKMSN PQMGMFFMLL AVNSATLIAI 
QDQYSADLTS FANGGLATLL GIGFAQLWVT VAQPFGAELA ARRLMKSGWR DLADTASGSR 
SGDVDRLSSR SLDRLGQLVP RLAALNVRDL GDVDGFADVR LGFNVVTLQQ QRPSLGQESG 
TLISQVLAGI ADHYRRRLKL GGSSPAQPQL QDTIDRALET VMRNEGDVGR RVTDALVGLR 
RVLFGQSPPP SLSPQAGGSQ SGAHQLSFAA E