| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5650 |
|---|
| Symbol | |
|---|
| ID | 7381122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 674924 |
|---|
| End bp | 675268 |
|---|
| Gene Length | 345 bp |
|---|
| Protein Length | 114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649216 |
|---|
| Product | Allophanate hydrolase |
|---|
| Protein accession | YP_002547453 |
|---|
| Protein GI | 222106662 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3806] Anti-sigma factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0555941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAA CGACCCGTGA CAACATGCTT TCAGGTGGCT GGAAAAGCCT GCCCTATGAG
GCGTTCCGCG ACGGTGTGAC CATTCACTGG ATCCGCCGTT TTGAGGGCGA CCAGCCCGGC
GTCGCCCTTC TCGCCTATCA GGCCGGAGCC TCGGTTCCCC GCCACCGCCA CGAAGGGCTG
GAAACCATTC TGGTGCTGGA AGGCAGCCAG TCCGACGAGA CCGGCACCTA TGGCACCGGC
TCCTATATCG TCAATGCGGC AGGCACCGAA CATTCCGTGT GGAGCATTGA TGGCTGCACC
GTCCTGATCC AATGGGATCG CCCCGTAACA CTATTGGAAA ATTGA
|
|---|
| Protein sequence | MAETTRDNML SGGWKSLPYE AFRDGVTIHW IRRFEGDQPG VALLAYQAGA SVPRHRHEGL
ETILVLEGSQ SDETGTYGTG SYIVNAAGTE HSVWSIDGCT VLIQWDRPVT LLEN
|
|---|
| |