| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5624 |
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| Symbol | |
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| ID | 7381100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 635579 |
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| End bp | 642925 |
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| Gene Length | 7347 bp |
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| Protein Length | 2448 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649194 |
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| Product | polyketide synthase |
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| Protein accession | YP_002547431 |
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| Protein GI | 222106640 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | [TIGR00517] acyl carrier protein
[TIGR02813] polyketide-type polyunsaturated fatty acid synthase PfaA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGGGT TCTCGCAGCG CGTATACGAT GTCTTTTCTC CTATCGCAAT TGTTGGCGTA
GGAGCTTTGT TTCCGGAAGC AAAAAATGCT GATGAATACT GGAACAATAT TGTTAAAGGC
AAGGATTGCC TGAAGGATGT GCCGGAGACC CATTGGAAAA TCTCCGATTA TTACGATCCA
AATCCTTCAA CGCCTGACAA AACCTATGCG CGCCGGGGCG GCTTCATTCC TGAAACGGCC
TTCAATCCTG TCGAGTTCGG TCTGCCGCCG TCTCAGCTTG ATGTCACTGA CATTCTGCAG
ATCCTCAGCC TCAGCGTTGC CAAGCAGACA TTTCTGGATG CGGGTTACGA ACATGCCAAA
TTGAACCGCG AAAAGACCGG CGTCGTGCTC GGCATTACCG GCGCCAATTC GCTTGTGACG
CCGCTAACCT CGCGCCTGCA ATATCCGCTG TGGCAGAAGG TTCTGGAGAG CCGGGGCCTT
CCCAAGGCCC AGGTTGACGA TATCGTCGAG ACGCTGAAGC TTGCCTACGC GCCTTGGGAG
GAAAACTCCT TCCCCGGCAT GCTGGGAAAT GTCGTCGCTG GGCGCATCGC CAACCGCTTC
GACCTTGGCG GTATCAATTG CACGGTAGAT GCGGCCTGCG CCAGTTCGCT GGCGGCCATG
CGCATGGCCA TCGATGAGCT GCATAGCGGT CGCGCCGACA TGATGCTGAC CGGCGGCTGC
GATGCCGAAA ACACCATCCT GATGTATATG TGCTTTTCCA AGACACCCGC CTTCAGCAAG
AAGGGGGTGA TTTCGCCGTT CGACGAGAAT TCCGACGGCA CGTTGATTGG CGAAGGCATC
GGTATGATGC TGCTGAAGCG GCTGGAAGAT GCCGAGCGTG ATGGCGACCA GGTTTATGCC
GTGATCAAGG GTCTCGGTTC GGCCAGCGAT GGCAAGTTCA AGAGCATTTA CGCACCGCGC
GCCGCCGGAC AGGTCAAGGC GCTGCAACGT GCCTATCAGC AGGCGGGCAT TTCTCCGCAT
GATGTTGATC TGTGGGAGGC GCATGGCACC GGCACGGCGG TTGGCGATGC GACTGAAGTA
GATGGTCTCA AGACCTTCCT GAAGAGCTGG GACAATGATG GGTCTTCTTC GCCCATAGCA
CTCGGCTCAG TCAAATCGCA GATCGGTCAT ACCAAGGCAG CAGCGGGTGC GGCTTCCGCC
ATCAAGGCCG CGCTTGCCTT GCAGCACGGC GTCCTGCCCC CAACCATCAA TGTTAACAGA
CCCGATCCCA AGCTGGGTCT GGACGAGACG GCGCTCTATC TGAATTCCAC GGCGCGTCCA
TGGTTCCGCG ATCCCAAGAC CGCCAAGCGC CGGGTTGGCG TCAGCGCCTT CGGCTTTGGT
GGCACGAATT TCCATCTGGT CCTTGAGGAA GCGCCACAGA CCGCAAAGGC ACCAAAGCTG
CGCAGCGTCC TGCCGCGACC CATTGTCGTT GCAGCCCCGA CTGTGGCTGC TTTGCGCAAG
CGTTGTGAAG AGCTTCTCAC CGCCACAGGC GAAACGGCCT GGCCTTTCGA GGTTTCAATC
CCCGCAAACC ATCCGCGTCT GGGCCTGGTT GCCGCCGACG ACGTCAGCCG CCGCGCTTTG
TTGAGTGAAG CGATCCAATT GCTCGACAGC CGTCCGGCCA CAGCCGAATG GCGTCATCCA
AAGGGCATCA CTTTCCGCCC CAGTGCATTT GAAAACGCTA AGCTGGCCGG CTTGTTTGCC
GGGCAGGGGT CGCAGCATCC CAATATGGGC CGGATGGCAG CGGTTGCCAT TCCGGCGCTC
GGCGATTTCG TCGGTGCTGC CGATACCTTG TTTGTCAAGG ACGGTGCCCA GCCCCTCAGC
CAGGTGATGT ATCCGATCCC GGCCTTTGAT GATGCGGATC GCAAGGCCCA GGAACAGGCA
TTGCGCCGCA CGCAATATGC CCAGACAGCA ATCGGCGCAC TGTCGGCAGG CCATTATCGC
TGGCTGCAAA ATCTCGGCCT CAAGCTGGAA GCCGTGGCTG GCCACAGCTT CGGCGAATTG
ACAGCGCTTT GGGCTTCCGG GGCCTTGAGC GATGCCGATT TCTCAAGCCT GGCCAAGGCG
CGTGGCGATG CCATGGCTGC TGTAACCGGC GACGGCGCTG GCACGATGAC GGCGGTGAAG
GCCGGTCGTG AGCAGTTGGA AAGCCTGATT GCCGCCACCA AGGGCAGCGT TCATTTCTGC
AATCTGAATA CGCCGAAGCA GACTGTAGTT GGCGGAGCGG TTGAGGCTAT CGAGAAATTC
GAGGCCGACC TTAAGGCTGC CTCAATCGAC TTTGTCCGGT TGAATGTTGC CGGGGCATTT
CACACGCCGC AGGTCGAAGG TGCCGTCACG GCATTTGCCG AGCGGATCGA CCAGACCAGT
TTTGCCGTGC CGCAGATCCC GGTTTATGCC AATCGCAATG GCAAGCCTTA TGCTGCATCG
GCTGCCGATG TCGCGGCCCA GCTCAAGGGG CAATTGCGCG AGCCTGTCGA ATTCATCAAG
ATTATCGAGC AGATGTATGC CGATGGCATC CGCGTCTTCA TCGAGTTCGG CCCGCGCTCG
ACGCTGTCGA AAATGACCGC CGATATTCTC GGCGACCGGC CTCACCTGGC AATTGCACTT
GACCATGGTC AGCCTGACAA GGCGGATGCC GGTCTTATCG AAGCGGTTGT TGATCTGGCG
GTTGCCGGTA TTGCACTTGA AAGCCCGGTC GGGACCGAAG GCCTTATCGA GGCTCCGGCC
AAGAAGGGCG AGATCAATCT GAATGGCATG AATTACGTGT CACCGTCCCG CAAGGAGGCC
TTTGCTAAGG CGCTGGCCAA TCCAGTCGTC GTTGCCCCCA AACCGGTTCC CACGCCGCCA
CAGCCTGTCG CCGCAAAGCC GCTGGCTGCT GCCCCCGCGC CTGTCCGGTC GGAACCAGCA
AAGCCAGTCG CTGCAAATGT CGCGTTCGGC GTTCCGGCAT CATCCCCGGC GCCTTCAATA
AAAGCGGCAT CCGTGGAAAA GCCGTCCGAG CCATTGGCAC CCAAACAAGC CGTTGCCCTG
ACGGCGCCTG CCTCCAGATC TTCATTTGCG GAGAAATCCA TGTCCATCCT GAAGAATGAA
TCCTCGTCCG AGCCAGCTGT GGCTCTCGGT GGCGGCGATA TCGTCGCTGA ATTGGCGCGG
TCCAACGGCG AACTGCATCG CGAATATCTC AAGTTCGAGC AAAGCGCCCT GCAAGCCCTG
GTGCACAATG CCAGCGAGTT GAGCGCCGCA CATGTCGATA TGCTCTGCGA GATCCACGAG
GAAACCAACC TCACCCACCG TGAATTCATG CGCAGCCTGC CCAGCCTGTT TCTTGGTCAG
GGCGAATTGC CAGCCGCCCG CGTCAGGACG GTCGAGCATG AGCCTGCAAG GCATGAACCC
GTCAAACGGA TGATTGAAAC CGCCGTCGCC CATGCCGCAC CTGTTGCCGC AGCCAAACCG
ACGGTCACAG CCAAGGCATT TGAGCCGGTC GCCACTCCTG TTCAGCCCCC AGCCGCCAAA
CCGGTTGCCG TGGCCCCGCC GGCTCCTGTC CCTGCAAAGC CTGTTGCCGC GCCGGCTGCG
GCTCCTGCTG CCGCATCCGC TGCACCAGCA GCGGTTGTCC GCGACACCTT GTTGGCTGTT
GTCAGCGAAA AGACCGGCTA TCCCGCAGAA GTCATTGACC TCGACATGGA TCTCGAAGCC
GATCTCGGCA TCGACTCGAT TAAGCGCGTC GAAATCCTCG GCTCTCTGAA AGAGCGCCTG
CCGCAAATGG CGGAGCTTTC CCCTGATCGT ATGGGTGAGC TGCGCACGCT GGCCCAAATT
CTCGAACTGG CAGGCTCTGC GTCCCCGGCG CTTCAAGCCT CTGCCACTCC GGCCGCGCAG
CACGCTGCTG CGTCCATCGT CGCCCCGACA CCAGCGGCAT TCGCCCCGGC TGTCGCGGCC
GGAGCCATCC GGGAAACCTT GTTGGCGGTT GTCAGTGAAA AGACTGGTTA TCCCGCTGAT
GTCATCGATC TCGAGATGGA TCTCGAAGCC GATCTCGGTA TCGACTCGAT CAAGCGCGTC
GAAATCCTTG GTTCGCTGAA AGAGCGCCTG CCGCAAATGG CGGAGCTTTC TCCTGATCGC
ATGGGTGAGC TGCGCACGCT GGCCCAAATC CTCGAACTCG CCGGTTCCGT CGCTCCTGCT
CCGGTCGCAC AGCCCGCCGC CGTCTCTATC GCTACTCCCG TATCGGCGGC GATCTCTCCT
GCTGTTGCGG CCGGAGCCGT GCGGGAAGCC CTGCTGTCTG TCGTCAGCGA AAAGACCGGC
TATCCCGCCG ATGTGATTGA TCTCGACATG GACCTCGAAG CCGATCTCGG CATCGACTCG
ATCAAGCGTG TGGAAATTCT CGGCTCGCTG AAAGAGCGTC TGCCGCAAAT GGCCGAACTT
TCTCCTGACC GCATGGGTGA ATTGCGCACG CTGGCCCAAA TTCTGGCACT GGCCACCGAA
GGTGCTGTCG CTGATGCGCC TGCTGCCTCC GTGGCGGCAC CGGTCCCGGC AACGGTCGCT
GTCCCGGCGC TCGCTCCGAC ACAGACAGTT GTTCCTGAAA CTGCCGGGTT GCCTGCTGGC
GCTGTCCGCG AAGCACTTCT CGCCGTCGTC AGTGAAAAGA CCGGTTATCC AACCGATGTC
ATCGATCTGG ATATGGACCT CGAAGCTGAT CTCGGCATCG ACTCGATCAA GCGTGTGGAA
ATCCTTGGCG CCTTGAAGGA GCGCCTGCCG CAAATGGCGG AACTTTCGCC TGACCGTATG
GGTGAATTGC GTACCCTGGC CCAAATTCTG ACCCTTGCTG AAGGTGAGGC TTCAAACGCT
GGGGAACCCC AGCAGAAAGA GGCAGCTCTC GCTTCTTTTA AGGATGGTGA CGATCTGATC
GGGCGCGGTG TCGTCACCCT TTTGCCAGCT CCGCTCGATC TGGTGACGCA ACAGGCCTTT
CAAAAGGGGG CAAAGTTTCT ACTGACCGGT ACCGATGATG CACTGATCCT TGCCCTTCAG
AAGGGATTGA AAAGTAAGGG TATTGAGGCG GTCTGGCTGC GGTTCGAAGG CAAGGTTTCC
TCGAAGGCTG GTCCGCAATT GGCGGCTGGC AAGGACGAGG CCGAGCTGAA ACAGCAATTC
GAAGCTCAGG GTCCTTGGGA TGGGGTGATC TATGTTCATC CCAAGACAAT CGACAACGCG
CTTCCCGGCG CTGAAAGCGA CGCATCGGTT CTCTGGCTGA AACGGGCCTT GCTGCTTGCC
AAGCTGTCGA TCACGCCGCT CACGGCGCGG GCTTCCCAGG GTCGTACGGT GTTCATGACG
CTGTCGCGGA TGGATGGAGC CCTCGGCTAC CGGGATGGCA GCCTTGCAAC GGTGGCATCC
GGTGCCTTGT CTGGCCTGGT CAAGACCTAT GCCGCTGAAG CACCGCATAT CTTTGCCCGC
GCCGTCGATA TCGCGCCGCA GATCGAAGAT GCCGCTGCTG CCGATCTGCT GGTGCAGGAA
GTGTTCGATG CCCGCCATAG CATTACCGAA ATCGGTCTTG ATGGGCAGGG GCGCTGGAAG
CCTTCCATTG AGGCGATTTC CTCCAGCGAT GCCGTGACGG TCGCCGATCC CGATGAATTG
TTCATCGTCA CCGGTGGTGC GCGGGGTGTG ACAGCCGATT GCGTGTTGGC CCTGGCCTCT
GCCGCTCCTC GTCGCTTCCT CCTGCTCGGT CGCTCCGCCC TTGAAGCCGA ACCGGCCTGG
GCTGCGGGTC TCGAAACCGA CGCGCAATTG AAGGGTGGAG CCCTTGCCGC ACTGCGCGAA
GGGAAAGCGC CGGTGACACC GAAGCTGATC GATCAGACCG TGCGTGGGGT TCTGGCGGGC
CGTGAAATCC GCCAGTTGCT GGCCGCACTG GAAAAGCTCG GCAGCCATGC CAGCTATCTG
TCGCTCGATA TTTCCTCTCC GGCGATTTCC AGCCTTGGCG ATCACCCCGA AATTCAGAAG
GCGGCGAAAA TCAGCCTTGT GCATGGGGCT GGCGCGCTTG CCGATGCGGC AATTGCCCAG
AAGAAAATCA GCGAAATGGA CCGTGTCTTC ACACCGAAAA TCTTCGGTCT GGCCGGGCTG
ATCAAGGCGC TGACGGGCAA GCCCTTCCAC CGCGTCCTGC TGTTTTCCTC GGTTGCCGGT
CTGTTTGGCA ATCCGGGTCA GGCCGATTAC GCCATGGCCA ATGAAATGCT CAACCGTTTC
GCCGCCAGCC AGTCGGTGAA GGGCGTCGAT GTCCGGGCGA TCAATTGGGG TCCGTGGCTT
GGCGGCATGG TCACACCGGA AATCCGCGAT ATTTTCATGA AACGCGGCGT TCCGATCATC
CCACGCGATA TCGGTGGCCA GTTCTTTGCC CGGGAAACCG CCATGCCTCT GCCAGCAACC
GGTGCAGTCC TGGTGGGTGG GTTGAAGCCG ATCAATGCCC GCTTCGTCCC CTTTGCCGAA
TTGCCACAGG CACCAAGGCG GCTGGCGCTC AGCGGTCACG ACTGGACGAA GTCCTTGCTG
TTGGCCGATC ATCAGATCAA GGGACGTCCC GTCGTTCCCG CCGCCTTCGT GCTTGGTCTG
GTGGCGGACG GCTTGGAAAG CCTGCTTCCA GGCTGGACAT TCTCAGGCTT CGATCAGTTC
AACGTGTTGA ACGGCCTTGT CATTAACAAG GATTGGCGCG GTGATTTCGA GCTGTCGCTC
AGCGCACTCC GCGCCGAGAC GGAAGAAACC ATTCGGCTGG ATGTGATGTT GGCCGATGGG
TCTGGTCGCC CACGCTACAA GGCGGACAAT ATCCTGCTGC GCAAGGCCGC TTTCATGCCG
CCACAGCCGG GCAAAGCTCT GCCTTCGCTG GAACCCTCGA CGCCTGCCAA TGGCTTTTAT
TCTGATGGCA CGCTGTTCCA TGGCGAGAGC CTGCAAATGC TCAAGACCTA CAGGAAGCTG
GAAACCGCGA GCTACCTGTT CCGCATCGCC CAGCCAGCGG CAATCCATAG TGCGGCGCTG
AACGGATTTG CTGACAGCAC ATTGCTCGAT GCTGTCTCCG TTGATGCGGT CCTGCAAGCA
GCACTGGCCG CAACGCGGCT GGAAGCCGAT AGCCCAAGCC TGCCGATGCG GCTTGGATCG
GCGACGCTGA CGAGCCGGCC TGAGCCTGGA TCAGATTGGC TGATTGCCGC CCGCCTCAAG
GCCAGCCGCG CCCAGGAACT GGATTGGGAA CTGACCGGCT ACGACCTTGA TGGCCGCTTG
CAGATGCAAT TGGTGGCAAC CACGGTCAAG CGTGACGAGG CACCGTCTGG CGCCCAGGGA
TCAAAATCCG TCGAGGCCGT TAAATGA
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| Protein sequence | MDGFSQRVYD VFSPIAIVGV GALFPEAKNA DEYWNNIVKG KDCLKDVPET HWKISDYYDP
NPSTPDKTYA RRGGFIPETA FNPVEFGLPP SQLDVTDILQ ILSLSVAKQT FLDAGYEHAK
LNREKTGVVL GITGANSLVT PLTSRLQYPL WQKVLESRGL PKAQVDDIVE TLKLAYAPWE
ENSFPGMLGN VVAGRIANRF DLGGINCTVD AACASSLAAM RMAIDELHSG RADMMLTGGC
DAENTILMYM CFSKTPAFSK KGVISPFDEN SDGTLIGEGI GMMLLKRLED AERDGDQVYA
VIKGLGSASD GKFKSIYAPR AAGQVKALQR AYQQAGISPH DVDLWEAHGT GTAVGDATEV
DGLKTFLKSW DNDGSSSPIA LGSVKSQIGH TKAAAGAASA IKAALALQHG VLPPTINVNR
PDPKLGLDET ALYLNSTARP WFRDPKTAKR RVGVSAFGFG GTNFHLVLEE APQTAKAPKL
RSVLPRPIVV AAPTVAALRK RCEELLTATG ETAWPFEVSI PANHPRLGLV AADDVSRRAL
LSEAIQLLDS RPATAEWRHP KGITFRPSAF ENAKLAGLFA GQGSQHPNMG RMAAVAIPAL
GDFVGAADTL FVKDGAQPLS QVMYPIPAFD DADRKAQEQA LRRTQYAQTA IGALSAGHYR
WLQNLGLKLE AVAGHSFGEL TALWASGALS DADFSSLAKA RGDAMAAVTG DGAGTMTAVK
AGREQLESLI AATKGSVHFC NLNTPKQTVV GGAVEAIEKF EADLKAASID FVRLNVAGAF
HTPQVEGAVT AFAERIDQTS FAVPQIPVYA NRNGKPYAAS AADVAAQLKG QLREPVEFIK
IIEQMYADGI RVFIEFGPRS TLSKMTADIL GDRPHLAIAL DHGQPDKADA GLIEAVVDLA
VAGIALESPV GTEGLIEAPA KKGEINLNGM NYVSPSRKEA FAKALANPVV VAPKPVPTPP
QPVAAKPLAA APAPVRSEPA KPVAANVAFG VPASSPAPSI KAASVEKPSE PLAPKQAVAL
TAPASRSSFA EKSMSILKNE SSSEPAVALG GGDIVAELAR SNGELHREYL KFEQSALQAL
VHNASELSAA HVDMLCEIHE ETNLTHREFM RSLPSLFLGQ GELPAARVRT VEHEPARHEP
VKRMIETAVA HAAPVAAAKP TVTAKAFEPV ATPVQPPAAK PVAVAPPAPV PAKPVAAPAA
APAAASAAPA AVVRDTLLAV VSEKTGYPAE VIDLDMDLEA DLGIDSIKRV EILGSLKERL
PQMAELSPDR MGELRTLAQI LELAGSASPA LQASATPAAQ HAAASIVAPT PAAFAPAVAA
GAIRETLLAV VSEKTGYPAD VIDLEMDLEA DLGIDSIKRV EILGSLKERL PQMAELSPDR
MGELRTLAQI LELAGSVAPA PVAQPAAVSI ATPVSAAISP AVAAGAVREA LLSVVSEKTG
YPADVIDLDM DLEADLGIDS IKRVEILGSL KERLPQMAEL SPDRMGELRT LAQILALATE
GAVADAPAAS VAAPVPATVA VPALAPTQTV VPETAGLPAG AVREALLAVV SEKTGYPTDV
IDLDMDLEAD LGIDSIKRVE ILGALKERLP QMAELSPDRM GELRTLAQIL TLAEGEASNA
GEPQQKEAAL ASFKDGDDLI GRGVVTLLPA PLDLVTQQAF QKGAKFLLTG TDDALILALQ
KGLKSKGIEA VWLRFEGKVS SKAGPQLAAG KDEAELKQQF EAQGPWDGVI YVHPKTIDNA
LPGAESDASV LWLKRALLLA KLSITPLTAR ASQGRTVFMT LSRMDGALGY RDGSLATVAS
GALSGLVKTY AAEAPHIFAR AVDIAPQIED AAAADLLVQE VFDARHSITE IGLDGQGRWK
PSIEAISSSD AVTVADPDEL FIVTGGARGV TADCVLALAS AAPRRFLLLG RSALEAEPAW
AAGLETDAQL KGGALAALRE GKAPVTPKLI DQTVRGVLAG REIRQLLAAL EKLGSHASYL
SLDISSPAIS SLGDHPEIQK AAKISLVHGA GALADAAIAQ KKISEMDRVF TPKIFGLAGL
IKALTGKPFH RVLLFSSVAG LFGNPGQADY AMANEMLNRF AASQSVKGVD VRAINWGPWL
GGMVTPEIRD IFMKRGVPII PRDIGGQFFA RETAMPLPAT GAVLVGGLKP INARFVPFAE
LPQAPRRLAL SGHDWTKSLL LADHQIKGRP VVPAAFVLGL VADGLESLLP GWTFSGFDQF
NVLNGLVINK DWRGDFELSL SALRAETEET IRLDVMLADG SGRPRYKADN ILLRKAAFMP
PQPGKALPSL EPSTPANGFY SDGTLFHGES LQMLKTYRKL ETASYLFRIA QPAAIHSAAL
NGFADSTLLD AVSVDAVLQA ALAATRLEAD SPSLPMRLGS ATLTSRPEPG SDWLIAARLK
ASRAQELDWE LTGYDLDGRL QMQLVATTVK RDEAPSGAQG SKSVEAVK
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