| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5606 |
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| Symbol | |
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| ID | 7381086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 620486 |
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| End bp | 623200 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649180 |
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| Product | ABC transporter nucleotide binding/ATPase protein |
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| Protein accession | YP_002547417 |
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| Protein GI | 222106626 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components
[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAA GCCTGGGGCG TTACATCTGG TCGAACACCT CTCTGCAACA GGTGTGGATA
CTGTGCATTG TCGGCCTGTC GATGATCCCC TATTTCCTGT CTTTCGATCT GCCCAAGCAG
ATCGTCAATG GCCCTATTCA AGGCCAGGGC TTTGAAGAGG CTGGGGCGAC AAAGCCGTTC
TTGCATGTTG CCTTCGACCT GCCATGGATC GGACATCTGG AAATCTTCAG CGGTTTCGAG
CTTAACCGCC TGCAAATGCT GATGGCTCTC AGCGTCGTCT TCCTGTGTCT TGTCGTGCTG
AACGGTTTGT TCAAATTCTA CATCAACACC TATAAGGGGC GGCTTGGTGA GCGCATGCTG
CGCCGCATCC GCTTCGAGCT GATCGATCGA GTCCTGCGGT TTCCGCCTGT GCATTTCAAG
CGGGTCAAAT CTGCCGAGAT TGCCACGATG ATCAAGGACG AGGTCGAGCC GCTGGGCGGT
TTTACCGGCG ATGCCTTCGT CCAACCGGCG CTTTTGGGTG GGCAGGCTCT GACGGCGCTA
ATCTTCATCA TCCTTCAGAA TGTCTGGCTG GGAATGATCG CCGCTGGCAT GGTTTGCGTT
CAGGCCGTCA TCATTCCACG CATGCGTAGG CGGCTGCTGG AACTGGGCCG TCAGCGTCAG
CTGACGGCGC GCCAGTTATC CGGGCGGGTT GGCGAAATCG TCGATGGCAT TCATACGATC
CATGCCCATG ACACATCCAA TTTTGAGCGC GCCGACATTG CCGCCCGTCT CGGCCTGATT
TTTTCGATCC GCTACGATCT CTATCAGTGG AAGTTCATGG TGAAATTCAT CAATAACTTC
CTCGCCCAAC TGACGCCGTT TCTGTTCTAC GCCATTGGCG GGTATATGGC GCTGGAGGGC
CGGCTCGACA TCGGCCAGCT CATCGCTGTT ATCGGCGCCT ATAAGGACCT GCCGGGTCCG
CTGAAGGAAT TGATAGACTG GGATCAGGCC CGCCAGGACG TTCAGGTCAA ATATGCTCAG
GTGGTCGAGC AATTCGATGT TGAGCGATTG GTTGATGCGC GGGTTCACAC GGTCGCGGCC
ACGCCGGTCG GCCCGCTTTC CGAGGCACTG GTGGCCTCGA ATCTGGTGCT TTGCGACGAT
AGTGGCGCGC GCCTGCTCAA TAGCGTTTCG CTGGATATTG CCCCCAATGA GACGGTTGCG
ATTATCGGTC AGAACGGTGG CGGCGGCGAG GCGCTGGCGG AAGCTCTCGG GCGTATTCTA
TGGCCGGAAT CCGGCCATAT CAGCATTGGT GGCCAGGATA TTCTCACCAT GCCGGAATCG
GTCACCGGGC GGCGGCTTTC CTTCGTGTCC TCGGATGCCT ATTTCTTCCA TGGAACTCTG
CGGGACAATC TCCTCTACGG GTTGAAACAT GCGCCTTTGA CAGATGTTAC CTATGACGGA
CTGGCGGCGC GCAGAAACAA ACGTGACCTT CTGGAGGCGC AGAGATCCGG CAATCCGCTT
CTCGATCTCA ACAGCGATTG GGTGGATTAT CGATCGGCTG GCGCCGAAGG GCCGGATGGT
CTGTTGAAGG TGATCCGTCC GGTTCTGGAT GCGGTGACGA TTTCCGAAGA TATTTTCGAT
CTCGCCCTGC GTTCACAAGT GGATACGCTT GCCCATCAGG AATTGACAGA GCGAATCGTC
GAGATCCGCC ATGCGCTGCG CCGTCGTTTG CATGACGAGA ATCTGGACGA CATTGTCGTA
CCCTTCGAGG CCGATGCCTA TAACAGCCAG GCGACGGTGG GTGAAAATCT ACTTTTCGGC
AAGATGAAAC CCTTGATGAT CGACGGTCAA CGGTTGGCGG CCCATCCTTA TTTTCGCAAG
GTGATGCGTG ATACCCGCAT TGGCGATGCG TTCTATGCAA TGGGGCTTGA AATCGCGGCG
AATGCTGTGG AACTGTTTCG AGACCTTCCG CCCGACCATC CGTTTTTCCA GCAATTGACC
TTCATGAGCG CGGAGGATCT TCCCGACTAC GAGGCTTTGC TGCAAAAGCT CCATGGCACA
GCCATAACGC AAGCCTCGGC CAGCGAGCGC AGCAGCATTA TCCGCCTCAG CTTTGCCTAT
ATCGAGCCGC GCCATCGTTT CGGCCTTTTG ACGCAGGAGT TGATGGACAA GATCGTCGAT
GCGCGTCGCG AGTTTCATGC CGGAGTTCCC GCGGATCTGG CGGAAAAAAT CGAACGTCAC
GACGTAGAAC GGTTCACCCT GTCGGCATCG TTGATGGACA ATGTGCTGTT TGGCCGGCTG
GCTGTGCGTG AAGCCGATGC GTCTGACCGG ATCCGTGCGA TCATCCGCGA CATTTTTAGA
GACCTCGGCC TTGCCGAAAG CGTGCTGTCG ATCGGGCTGG ATTTCGATGT TGGCTCGCAA
GGGCGGCGGT TAACCGCTGT CCAGCGCCAG AAGCTCAATC TGGCGCGGGC GCTGGTGAAG
CGGTCGGATT ATTTCATCTT CAACAGGCCC TTGTCGGCGC TCGATCAGCG GGCGCAGGAT
AAGATCGTCA GCCACATCAT GCAGGACCTG CATTGCGACG GTCAGCGGCC CTCAATCATT
TGGGTTTTGC CAAATGCGGA TATAAGCGGG CTTTTTGACA GGATACTCGT GTTCGACAAA
GGAAATCTTG TCGAAACCGG GAGTTTCGAA GAGCTTTCCG CCAAAGACGG GATGTTCAAA
CAGTTTCTCT CGTAA
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| Protein sequence | MEKSLGRYIW SNTSLQQVWI LCIVGLSMIP YFLSFDLPKQ IVNGPIQGQG FEEAGATKPF
LHVAFDLPWI GHLEIFSGFE LNRLQMLMAL SVVFLCLVVL NGLFKFYINT YKGRLGERML
RRIRFELIDR VLRFPPVHFK RVKSAEIATM IKDEVEPLGG FTGDAFVQPA LLGGQALTAL
IFIILQNVWL GMIAAGMVCV QAVIIPRMRR RLLELGRQRQ LTARQLSGRV GEIVDGIHTI
HAHDTSNFER ADIAARLGLI FSIRYDLYQW KFMVKFINNF LAQLTPFLFY AIGGYMALEG
RLDIGQLIAV IGAYKDLPGP LKELIDWDQA RQDVQVKYAQ VVEQFDVERL VDARVHTVAA
TPVGPLSEAL VASNLVLCDD SGARLLNSVS LDIAPNETVA IIGQNGGGGE ALAEALGRIL
WPESGHISIG GQDILTMPES VTGRRLSFVS SDAYFFHGTL RDNLLYGLKH APLTDVTYDG
LAARRNKRDL LEAQRSGNPL LDLNSDWVDY RSAGAEGPDG LLKVIRPVLD AVTISEDIFD
LALRSQVDTL AHQELTERIV EIRHALRRRL HDENLDDIVV PFEADAYNSQ ATVGENLLFG
KMKPLMIDGQ RLAAHPYFRK VMRDTRIGDA FYAMGLEIAA NAVELFRDLP PDHPFFQQLT
FMSAEDLPDY EALLQKLHGT AITQASASER SSIIRLSFAY IEPRHRFGLL TQELMDKIVD
ARREFHAGVP ADLAEKIERH DVERFTLSAS LMDNVLFGRL AVREADASDR IRAIIRDIFR
DLGLAESVLS IGLDFDVGSQ GRRLTAVQRQ KLNLARALVK RSDYFIFNRP LSALDQRAQD
KIVSHIMQDL HCDGQRPSII WVLPNADISG LFDRILVFDK GNLVETGSFE ELSAKDGMFK
QFLS
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