| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5602 |
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| Symbol | |
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| ID | 7381082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 613931 |
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| End bp | 615901 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643649176 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002547413 |
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| Protein GI | 222106622 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGCGTA TTCTTGGGAC GATCATATGT TGTTTCGTCA TGGCAACCGG GTACATCGCC
TATGTGATAG CCGAACGTCA AACGACGCTT GAGAAATTTG CCCGTTACAA TGATTCCTGG
GCCGTCAGTC AAACCCTCTC CGAATATATG AGGCTTGAGC ATCGGCTGGC GACATCCGCA
TTCGACATGG GTGAGTTTGA CCGGGATGAT TTGCGTCTTC GTCTGGATAT CATGCTGAGC
CGGCTGGAAT TATTCGAGCA AGGCAATTTA AAGAGCTTCA TTGATGCCGA TCCGCAGCGT
GTGGATCTGA TCGCCAAGCT CAGCGACGTT CTTGAAACTC TCAACGGGCG GTTCGGAACG
CTGGACCTTG AAGCCATCAA AGTGCTGTTA CAGAAAATGG AACTTCTGGA TGGTCCGATG
ACAAGGCTGG CATCGTCTGC TCTCGAAGCC GACGTCAGCA AGATTGGTGC CGCCCAGGCT
GAGTTGCGGC ACCTTCATCT CATCTACACC GCCCTTGCTG GGGGGCTTAT CCTGTGCGGT
ATTGTGCTTG TCGGCTTGCT TTTGCGTCAC AACAGTCTTC TGGATAAAGC ACATCGGCGT
ATGCAACGGT TGACAGACGA TCTGCGTGCG GCGTCCTGGG AGCTGAAGTC ACAAAACAAT
CGCCTCGAAT ATGTCGCTCA CCATGATTCC CTGACAGGTC TGCCCAATCG CATCCTCTTT
CGTCAGGATC TGGAAGCAAG GCTGGTATCG GCCAAAGCTG GCGGACCGCC GGCCATCATC
CTGCTGTTGG ATCTCGATGG GTTCAAGGAT GTGAACGACA CGCTAGGTCA CGACATCGGT
GATGCCTTGC TAAGGATGGT TGCGAGTCGG CTTGTCGACA TCAAGGACCA CGGCGATCTC
GTCTGTCGTT TGGGAGGAGA CGAATTCGCG ATCTTGTCCA CCGGTCTGAC CGAGACACAG
GCGATGGATT TTGCCACGCA TCTGATGCAT GAACTTGGCC TTGTGTACCT TGTCGGAGAC
CAGGAAATCA AGATCGGCAC TTGTGTGGGT GTGGCTATCT TCAATGACGA GCCGGATACG
GACGAACTCT TCAAGCGTGC TGACCTTGCT CTCTATGAAG CCAAGGCGTT GGGGCCGAGC
CATGCCTGTG TGTTTGAAAA CCAGATGCAG ACAAGGTTGA AGGACAGAAA GTCGTTCGAG
GCGGATTTGC AAACGGCCTT GCAAAATGGG GAAATGGAAG TCTACTACCA ACCATTGGCG
ACCACTGCGA CGCGCGAGAT TTGCGGTTAT GAAGCATTGC TGCGCTGGAC ACATCCAAGC
CGCGGTTCGG TATCACCGGT TGACTTCATC CCTGTCGCCG AGAAAATCGG GGTCATCGAT
GGGCTTGGGG ATTGGGTTCT GCGGACCGCT TGCATGGAAG CGGCAAGCTG GCGCGGCAAT
CTCAAAATCG CGGTGAACCT GTCCTCAGTG CAGTTTCGCA GCGCGACGCT CGTGCAAAAG
GTTTTAGATG CCCTGGAAAT CAGCGGCCTT TCTGCGGGCC GTCTAGAGCT TGAGATCACT
GAATCCGTCT TGCTTGACAA AAACGAACTG ACCCTGAAAA CCTTGAGGGA GTTGAAGGCG
ATCGGGATTC AGATTGCCAT GGATGATTTC GGCACGGGTT ATTCTTCGCT CGGCAGCTTG
CGGGGCTTTC CGTTTGACAA GTTGAAGATC GATCGGTCTT TTATCCGCGA TGTGACGACA
AGGGCGGATG CCCTGGCAAT CGCAGAGCTT GTGACAGGAA TTGGCGCCAG CCTTGGCATG
ACCACGACGG CTGAAGGTGT GGAAACGGAA GAACAATTCG AATGCGTGAA AAGACTGGGT
TGCGATCAGG TCCAGGGATA CCTGATCGGC AGGCCAGAAC CGGCGAGCTT TCTCACCCAT
CTTCTTCAGG AAGATGACAA CAAGGAAGTA ACCTTCGACC AATCATGGTA A
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| Protein sequence | MRRILGTIIC CFVMATGYIA YVIAERQTTL EKFARYNDSW AVSQTLSEYM RLEHRLATSA
FDMGEFDRDD LRLRLDIMLS RLELFEQGNL KSFIDADPQR VDLIAKLSDV LETLNGRFGT
LDLEAIKVLL QKMELLDGPM TRLASSALEA DVSKIGAAQA ELRHLHLIYT ALAGGLILCG
IVLVGLLLRH NSLLDKAHRR MQRLTDDLRA ASWELKSQNN RLEYVAHHDS LTGLPNRILF
RQDLEARLVS AKAGGPPAII LLLDLDGFKD VNDTLGHDIG DALLRMVASR LVDIKDHGDL
VCRLGGDEFA ILSTGLTETQ AMDFATHLMH ELGLVYLVGD QEIKIGTCVG VAIFNDEPDT
DELFKRADLA LYEAKALGPS HACVFENQMQ TRLKDRKSFE ADLQTALQNG EMEVYYQPLA
TTATREICGY EALLRWTHPS RGSVSPVDFI PVAEKIGVID GLGDWVLRTA CMEAASWRGN
LKIAVNLSSV QFRSATLVQK VLDALEISGL SAGRLELEIT ESVLLDKNEL TLKTLRELKA
IGIQIAMDDF GTGYSSLGSL RGFPFDKLKI DRSFIRDVTT RADALAIAEL VTGIGASLGM
TTTAEGVETE EQFECVKRLG CDQVQGYLIG RPEPASFLTH LLQEDDNKEV TFDQSW
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