| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5598 |
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| Symbol | |
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| ID | 7381078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 608877 |
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| End bp | 609617 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649172 |
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| Product | Transcriptional regulator |
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| Protein accession | YP_002547409 |
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| Protein GI | 222106618 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0201808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGGAC TGGGACGCTT TGTCGATATT TTGAGGCTAT TCGACGAGAA GACGTCCGAG
TGGACCATAC AGGATATCGC AGAGCGGCTG GATGTGCCTG GAAGCACGGT CTACCGCACG
GTACGGGAGT TGGTCGGACA AGGGTTTCTA GATCCTTCCC GGGAGGGTCA TTATCGCCTC
GGCGCGGTTT TTATCGAATT TGATCGACGT CTTCGCCTCT CCGATCCACT GATCCGCGAG
GGCGTGCCCT TGTTGCGTGA CGTTGTGTCT GCCGTTCAGT TTCCTTGTGT CGCGGTCATC
GCACGGCTGT ATCGCGACCA GGTGATTTGC GTTGCCGATG ATCGTAGCCC CGCCACCGAT
ATCGCCACCA GCTATGAGCG AGGCAGGCCC ATGCCATTGT TGCGGGGTGC CACGTCAAAA
ACCATTCTGG CACAATTGCC GCGGGCAAAG CTGAGCAAGA TCATTAAAGG CGCGGAGGGA
GTGGACCGGG CATTTGACGA TATCGCATCT GAACTGGCCG CCATCCGTAA GCGCGGCTTT
ACGGTGACGC GTGGAGAAGT GGACCAGGGT CTTGTTGGCA TTTCTGTACC CGTCACCTGC
GCGCAAGGGG CAATCAATGC CAGCTTCAGC CTGATCGTCC GTGCCAGCGA TTTCGATGAC
TCCACTGAAC GGCGGCTGGC GATGCTTTTG TTGCCTGCAT CTTCAATCCT TGCTGACAAG
CTAAATTCCC GGTGGGTTTG A
|
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| Protein sequence | MAGLGRFVDI LRLFDEKTSE WTIQDIAERL DVPGSTVYRT VRELVGQGFL DPSREGHYRL
GAVFIEFDRR LRLSDPLIRE GVPLLRDVVS AVQFPCVAVI ARLYRDQVIC VADDRSPATD
IATSYERGRP MPLLRGATSK TILAQLPRAK LSKIIKGAEG VDRAFDDIAS ELAAIRKRGF
TVTRGEVDQG LVGISVPVTC AQGAINASFS LIVRASDFDD STERRLAMLL LPASSILADK
LNSRWV
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