| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5517 |
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| Symbol | |
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| ID | 7381433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 514623 |
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| End bp | 515762 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649105 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002547342 |
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| Protein GI | 222106551 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.585071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC TGACCGTAAA CGACATGGAT GAGTCCCGAC CCGAAGCGGG GCGCGCGGAA
AAACTCTACC AGGCCAGCCC CCGGCAATTG ATGTGGTGGC GGTTCAAGCG CCACAAGGTG
GCGATGGTTT CGGGGATTAT CCTCATCCTG GCCTATCTGG TCACCGGACT AGCCGAATTC
ACGGCACCCT ATGATGCATT CCAGGGCAAT GCCCGCACGA CATTACTACC GCCCCAGGCA
CTGCATCTGT TTGACGAGGA AGGAAATTTC CACGGCCCCT TCGTCTATGC GACGACCCGC
ACCCGCGATC CCGTAACCTT GAGGCCGATG TACAAGCCGG ATACGTCGAA GATCGTGCCG
ATCCGATTTT TCGTCCAGGG ACAGACCTAT CGGTTCTGGG GCTTGATCGA GGGGAACCTG
CGTCTGTTCG GTGCTGCGGG GCAGGACAAA ATCAACCTGC TCGGCACCGA TACGCTGGGA
CGCGATGTGC TGTCGCGGCT GATCTATGGC GGGCGCATCT CGCTATCTGT CGGGTTGATC
GGCGTTGCCG TCAGCTTCGT TCTCGGGCTG ACGCTGGGAT CGATTTCGGG CTATTTCGGC
GGGATCACCG ATAATATCGT CCAGCGCGGC ATGGAATTTC TGCGCTGTAT TCCGACCATC
CCCCTGTGGA TGGGGCTTGC TGCCGCCCTG CCGATCACCT GGGACCCGCT GTTTGTCTAT
TTTCTCGTGA CACTGCTGTT GTCGCTGATC GGCTGGACCT ATGTGGCCCG CACCGTACGG
GGCCGGTTCC TGTCGGTGAA AAACGAGGAT TTCGTGCTGG CGGCCCGGTT TTGCGGGACA
TCTGAAGCGA AGATCATCAC CCGGCACATG CTGCCGTCGA TGACCAGCTA TATCATCGCG
GCGCTGACCT TGTCGGTGCC GGACATGATC CTTGGGGAGA CGGCATTGAG CTTTCTCGGT
CTTGGCCTGC GTCCGCCGGT GGTCAGCTGG GGTGTGCTGC TGCAAGAGGC TCAAAACCTG
CGAACAATCT CGCAGGCGCC TTGGTTGCTG GCACCGGGGG CGGCCATCGT CATTGTCGTC
CTTGCCTTCA ATTTCCTTGG TGACGGCCTG CGCGATGCAG CCGATCCCTA TAGCAAATGA
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| Protein sequence | MTDLTVNDMD ESRPEAGRAE KLYQASPRQL MWWRFKRHKV AMVSGIILIL AYLVTGLAEF
TAPYDAFQGN ARTTLLPPQA LHLFDEEGNF HGPFVYATTR TRDPVTLRPM YKPDTSKIVP
IRFFVQGQTY RFWGLIEGNL RLFGAAGQDK INLLGTDTLG RDVLSRLIYG GRISLSVGLI
GVAVSFVLGL TLGSISGYFG GITDNIVQRG MEFLRCIPTI PLWMGLAAAL PITWDPLFVY
FLVTLLLSLI GWTYVARTVR GRFLSVKNED FVLAARFCGT SEAKIITRHM LPSMTSYIIA
ALTLSVPDMI LGETALSFLG LGLRPPVVSW GVLLQEAQNL RTISQAPWLL APGAAIVIVV
LAFNFLGDGL RDAADPYSK
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