| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5508 |
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| Symbol | |
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| ID | 7381425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 503988 |
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| End bp | 504830 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649097 |
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| Product | ABC transporter membrane spanning protein |
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| Protein accession | YP_002547334 |
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| Protein GI | 222106543 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCGCG ATCAGGGCAT CGGCTCAAAA CTCTGGCGCA TGGCGGTCTG GGCGCTCGCC
GGGCTGTTCA TCCTCAACCT CGTGGCGGTG ATTGCATCCG TCGTGGTCAA TTCCTTTGCC
CGCCGCTGGC TTGGCACCTG GCTGCCAACC GGCTGGACGA CGCGATGGTA TTCCGATGCC
TGGAGCGAGT TTCAACTGTC CAGCGTCGTT GCCGTCACCT TCCAGATCAC CTTCACCGTG
GTGATCATTT CCGGCCTGCT CGGGGTGATG ACCGCCTATG CGCTGGCCCG GCGGGATTTC
CCCGGCAAAA AGCTGGTCAT CCTCACATTC CTGCTGCCAC TTTTGGTGCC GCCGCTCACC
TATGGCATTC CATTGGCCAC GGTTCTCTAT CAGGTCGGCC TTGGCGGAAG CTTCTGGGGT
GTGGTGCTGA TCAATCTCGT GCCGTCGCTG CCCTTCGTCA TTCTCGTGAT GATCCCCTTC
ATCGAGCAGA TCGACCCGCG CATCGAGGCC GCCGCCAAGG TCTTTGGGGC CGGAACCTGG
AGCCTGTTCA CCCGCATCCT GCTACCGCTA CTGTTGCCGG GCATGCTGGC CGCCCTGCTG
CTGGTGCTGG TGCGCACCAT CGCCATGTTC GAGCTGACCT TCCTGATTGC CGGGCCGACG
ACGCAAACAC TGGTCGTATC GCTCTACTAT GCGGTCTTCG CGTCCGGGGT TCGGGCATCG
CAATCCATCG ATGCCATGGC TGTGGTCTAT ATGGTCACCA CCCTGTTCTG GCTGGTCATC
GCCCTGCAAT TCGTCAGCCC GACGCAAATC GTCGCCAGGG CAAAACAGCA ACCGGCGGCG
TGA
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| Protein sequence | MIRDQGIGSK LWRMAVWALA GLFILNLVAV IASVVVNSFA RRWLGTWLPT GWTTRWYSDA
WSEFQLSSVV AVTFQITFTV VIISGLLGVM TAYALARRDF PGKKLVILTF LLPLLVPPLT
YGIPLATVLY QVGLGGSFWG VVLINLVPSL PFVILVMIPF IEQIDPRIEA AAKVFGAGTW
SLFTRILLPL LLPGMLAALL LVLVRTIAMF ELTFLIAGPT TQTLVVSLYY AVFASGVRAS
QSIDAMAVVY MVTTLFWLVI ALQFVSPTQI VARAKQQPAA
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