Gene Avi_5475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5475 
Symbol 
ID7381563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp473367 
End bp473834 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content56% 
IMG OID643649070 
Producthypothetical protein 
Protein accessionYP_002547307 
Protein GI222106516 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.645402 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGACGA AAAAAGGCAA ATACGGTTTG AAAGCGCTGG TGGATCTGGC TCAGCTTGGA 
CCGGGTGAAA CAGCGTTCAT CAGCGAGATT GCGCTCAGAA ACAACATTCC GAAGAAGTTT 
CTCGACACCA TTCTTCTCGA ATTGCGCAAT GGTGGCATCC TGCGGTCGAA AAAAGGCCCG 
GGCGGCGGTT ACTCCCTGTC GCATCCCGCC AGCGAAATCC GTATTGGCCA CGCCATTCGC 
CTGCTGGATG GGCCGCTTGC GCCGATCCGT TGTGCCAGCC GCACCGCTTT CGAAGCTTGC 
GATGATTGTG CCGATCCGGT CAACTGTCAG GTCCGGCGGT CGATGACCCA GGTGCGGGAC 
GCCATTGCGG CTATTCTCGA CAATATGACA CTGGAACAAT TCGTCGCTAC GCCAAGCCTG 
AATGAGCTGA CGCAGGATGA GCAGCAGGAA AAGCGCGCTA CTGCATAA
 
Protein sequence
MLTKKGKYGL KALVDLAQLG PGETAFISEI ALRNNIPKKF LDTILLELRN GGILRSKKGP 
GGGYSLSHPA SEIRIGHAIR LLDGPLAPIR CASRTAFEAC DDCADPVNCQ VRRSMTQVRD 
AIAAILDNMT LEQFVATPSL NELTQDEQQE KRATA