Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5458 |
Symbol | |
ID | 7381550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 456328 |
End bp | 456978 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643649057 |
Product | ABC transporter membrane spanning protein (amino acid) |
Protein accession | YP_002547294 |
Protein GI | 222106503 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTCTA TCGGACCCAA TGAACTGTTT TTCCTGCTGC AAGGTTTGAA ATGGACGCTG GCGTTGACCG CCATCGGCTT TGTCGGCGGC GGATTCTTTG GCCTTTGCGT CGCTTTGGCC CGGGTGGCCG ATAGCGCAGC TCTGCGCAAG GCGACCGCAG GCTATATCGC CGTCTTCCAA GGCACGCCGC TGCTGATGCA GCTCTTCGTC GTCTATTACG GCGTTGCGTT GCTCGGTCTG GACGTGGATG CCTGGATCGC CGTCGCCATT GCCTTCACCC TGCATGCCAG CGCCTTCCTG GGCGATATCT GGCGCGGCGG CATTCAGGCC GTTCCCAAGG GGCAGACGGA AGCCGCCAAG GCGCTCGGCC TGCATTACGG ATCGATCATG AAGGACGTGG TGCTGCCGCA GGCTTTCAAA GTCTCCCTGC CCGCCACCAT CGGCTTTCTG GTACAATTGA TCAAAGGGAC CTCGCTTGCC GCCATTGTCG GCTTCGTGGA ACTGTCACGG GCGGGGCAGA TCGTCTCCAA CCAGACATTC CGGCCGCTGA CGGTCTTTGC CATCGTCGGC ATCATCTATT TCCTGATTTG CTGGCCGCTT TCACTCTGGG GCGCCAGAAA AGAGAAACGG CTGCAAGCCG CCGCCCGGTA A
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Protein sequence | MASIGPNELF FLLQGLKWTL ALTAIGFVGG GFFGLCVALA RVADSAALRK ATAGYIAVFQ GTPLLMQLFV VYYGVALLGL DVDAWIAVAI AFTLHASAFL GDIWRGGIQA VPKGQTEAAK ALGLHYGSIM KDVVLPQAFK VSLPATIGFL VQLIKGTSLA AIVGFVELSR AGQIVSNQTF RPLTVFAIVG IIYFLICWPL SLWGARKEKR LQAAAR
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