| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5404 |
|---|
| Symbol | |
|---|
| ID | 7381506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 404626 |
|---|
| End bp | 405399 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649014 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein |
|---|
| Protein accession | YP_002547251 |
|---|
| Protein GI | 222106460 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.255113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATAC CCGCAATCCG CTTTGAGCGG CTTGGTCAGG TCTTTTCGAC CCGCTCAGGA
CAAACGGAAG CGCTGCGCGA TGTCAGCTTC GAGGTGGCGC GGCACGAATT CCTAGCCATT
CTCGGCCCGT CTGGTTGCGG CAAATCCACC TTGTTGCGGA TGATTGCCGG TCTGCTTGCG
CCCAGCAGTG GTTCGCTCCA GGTGTTCGGT CATCCGGTGA CCGAACCACG CGACGATATC
GGCATCGTTT TCCAGAAGCC GACACTGCTG CCCTGGGCGA CAGTCGAGGA TAATGTGCTG
TTTCCGGCTC GCCACAAGCG CGGCAGGGTG AGCGCCGAGG AACGGCAGCG GGCAGGCGAG
TTGTTGCGGA TGGTCGGGCT GGAGGGGTTT GCGTCCCGGC TTCCCGATGA ATTGTCCGGC
GGCATGCAGC AGCGGGTTGG TATTGCGCGG GCCTTGCTGA TGGACCCGGA TATCCTTTTG
ATGGACGAGC CGTTTTCGGC GCTTGATGCG CTGACCCGCG AGGTGATGGG CTTTGATCTG
CTGCGGATTT TTACCGAACG TCCGAAGACG GTGGTGTTCA TCACCCATTC CGTCAACGAG
GCGGCGCTGC TGGCCGACCG CGTGCTGGTG ATGACTGGCC GTCCCGGCAC GGTGCTGACC
GATATTGTCG TGCCAGTCGG TCGGCCACGT GGTCCCGAAA CAGCCAACGA GAGAGCCATT
CATGACCTTA CCGCTTATCT CCGCGACCTC CTCCTCAAGC GACAGGCGGC CTGA
|
|---|
| Protein sequence | MTIPAIRFER LGQVFSTRSG QTEALRDVSF EVARHEFLAI LGPSGCGKST LLRMIAGLLA
PSSGSLQVFG HPVTEPRDDI GIVFQKPTLL PWATVEDNVL FPARHKRGRV SAEERQRAGE
LLRMVGLEGF ASRLPDELSG GMQQRVGIAR ALLMDPDILL MDEPFSALDA LTREVMGFDL
LRIFTERPKT VVFITHSVNE AALLADRVLV MTGRPGTVLT DIVVPVGRPR GPETANERAI
HDLTAYLRDL LLKRQAA
|
|---|
| |