Gene Avi_5375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5375 
Symbol 
ID7380728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp375466 
End bp376494 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content55% 
IMG OID643648989 
ProductABC transporter membrane spanning protein (dipeptide) 
Protein accessionYP_002547226 
Protein GI222106435 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.296899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTGC ATGTTGTCGA GCAGATCGTG AGGCGGGTGT TTTCCGTGGT CATGGTGCTG 
TTCGTGCTGT CTTTGATGAT TTTTGCGCTG GCCCGCGTGG TACCCGGCGA TCCGGCCCGC
ATGGCGCTGG GGCCGTCGGC ATCGCAGGAA CAGGTCACGG CGCTGGCCCG TGAAATGGGA
CTCGATCAGC CTGTCCTTGT GCAATATGGC CGCTACATCA CGAATGCCCT GCAAGGCGAT
CTTGGCCAAT CGCTGTCGTC GCATCGTCCC GTCATTCAGG ATGTTGTTGA ATTTCTCCCC
GCCACGCTGG AGCTTGTGGT GGTGACGGTC ATTCTCGATC TGCTGATTGC CATTCCCCTT
GGCGTCATCA CCGCACGTCA CCGAAACACC TGGATCGATA ATATCGGACG ACTGTTTTCC
ATGGTCGGCG TCACGGTGCC GTCGTTTCTG TTTGCCATTG GTCTGCAATT GTTTGCGGCG
AATTTTCTGC CGGGCTGGCC TTTGTTGGGG CAGGTGAATT TCGATCTTCA CGCCCCCGCC
GGGCCAACCG GCTTTCTGTT GGTTGATAGT TTGATCCATG GCCGCGCCGA TGTGTTTGTG
GATGCCCTGC AACATCTGAT CTTTCCGGCA TTGGCACTGG CCATGGCAGG CATTGGCCAG
ATCACCCGCA TCATGCGCTC GGCAATGATT GAAAATCAGC GCAAGGACCA TGTTCTAACA
CTGCTCAGTT TTGGCGTGCC GGATTATGTT GTGACCTTTC GCTACCTGCT CAAGTTGTCG
TCTGTAGCAC CGCTGACCAT CATGGGGCTG GAATTTGCCT CGCTGATTGG CAATGCCTTT
GTGGTGGAAA TGGTGTTTGG CTGGGGTGGT TTTGCGTCTT ACGGTCTCAA CGCCATCCTG
CAAAAAGACC TGAACGCCCT GATGGCTGTG GTGCTGATTT CCGGCCTGTT TTTCATTCTC
GCCAATCTTG TCATCGATCT GATTGTCAGC CTGATTGATC CGCGCCTGCG TTTTCGGGGA
GGCCAATGA
 
Protein sequence
MILHVVEQIV RRVFSVVMVL FVLSLMIFAL ARVVPGDPAR MALGPSASQE QVTALAREMG 
LDQPVLVQYG RYITNALQGD LGQSLSSHRP VIQDVVEFLP ATLELVVVTV ILDLLIAIPL
GVITARHRNT WIDNIGRLFS MVGVTVPSFL FAIGLQLFAA NFLPGWPLLG QVNFDLHAPA
GPTGFLLVDS LIHGRADVFV DALQHLIFPA LALAMAGIGQ ITRIMRSAMI ENQRKDHVLT
LLSFGVPDYV VTFRYLLKLS SVAPLTIMGL EFASLIGNAF VVEMVFGWGG FASYGLNAIL
QKDLNALMAV VLISGLFFIL ANLVIDLIVS LIDPRLRFRG GQ