| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5349 |
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| Symbol | dppA |
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| ID | 7380705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 347965 |
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| End bp | 349584 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648966 |
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| Product | ABC transporter substrate binding protein (dipeptide) |
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| Protein accession | YP_002547203 |
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| Protein GI | 222106412 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.60385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTC GTCTATTCGG CGGAGCTGTG GCCGTGTCGG TTGCTGCTTT GCTCACCAGC
CCGGCTGTTG CTTTTGAAGG CAGAAGCGTT GTGGCGCCCG ATTGCAACTA TGGTGGCAAG
ATCAAGTCCA TCGTGGCGAC CGATGAGCAC ACGGTGACCT TCTCCATGTG CTCGCCCGAT
CCGGCCTTCA AAGCCAAGGC GGCTTTCGTA CCCTTCGGCA TCCAGCCGGC CAAGCATATC
GAAGAGGCTG GTCCGAAGAA GAAGCTGCTC GACAATCCGA TCGGCACTGG GCCGTTCAAG
CTGGAAAGCT GGAATCGCGG CGATTCCATC ACCATGACCC GCAACGAGAA TTACTGGGGT
GCCAAGCCGG CTTTCGACAA GCTGGTGTTT CGCTGGAATC AGTCCGGCGC GGGCCGCCTG
AATGAATTGC GCTCCGGCAC GGTCGATGAA ATCACCAATA TCAGCCCGGA TGATTTCGAC
AGTGTCAAGA ACGATCCGGA CCTGCAATTC CTGCCGCAGG AAAGCCCGAA CATTCTCTAT
CTCGGCATGG TCAACACCGC CAAGCCTTTT GACAATGAGA AGGTGCGCCA GGCGATTGCC
ATGGGCATCG ATCGCCAGCG CATCGTCGAT AATTTCTATC CAAAAGGTTC GGTCGTCGCC
AGCCATTTCA CGCCCTGTTC GCTGCCCAAT GGCTGCGCTG GCAAGGATTG GTACGGGTTT
GATGCGAGCG CGGCTAAAAA ACTGCTGGCC GATGCCGGAT ACCCGAATGG GTTCAAGACC
AAGATCTACT ACCGCGATGT GTTCCGCGCT TACCTGCCGG AACCAAGCGT CGTGGCTGTC
GAATTCCAGA CGCAGCTGAA GAAAAATCTC GGCATCGATG CGGAAGTGGT TCCGATTGAA
TCGGGTAAAT TCATTGATGA TACCTCCGCT GGCCGGATCG ATGGGCTCTA TCTGCTGGGT
TGGGGGGCTG ACTATCCGCA TGTCACCAAC TTCCTCGATT ATCACTTCGG CAAGACATCG
AAAATGTTCG GCACCACTTT CCCGGAAATT ACCGAGGGGT TGACCAAAGG CGGAACGATT
GCTGAGACAA AGACCGCCGA ACCGATCTAT GCGGCCGTCA ACGATGCCAT TCGCCAGCAT
GTGCCGATGG TGCCGATTGT CCATGGCGCC GCCGCCTATG CCGCTCGGGC GACCTTGAAG
AATGCCATCG TCCGCCCCTT TGGCTCGCCG TTGTTGCAGG ATTCCAATCC GGGTAAGGAT
ACGCTGGTCT TCATGCAGAA TGCCGAGCCG ATCAGCCTCT ATTGCGGCGA TGAAACGGAT
GGCGAAACGC TGAATGCCTG CACGCCGATT ACGGAAGCGC TGCTGGATTA TGCAAAGGAC
AGCGGCGATA TTGTTCCCGC TCTGGCCACC AGCTGTGATG CCAATGCGGA TTCGACCGTT
TGGACCTGCA AGCTGCGGAC CGGCGTGAAA TTCACCGACG GCTCTGATTT TACCGCCAAT
GACGTGGTGG TATCCTGGGC GGCGGGCATT GATGCATCCA ATCCGGCCCA TGTCGGCAAT
ACCGGCTCCT TCGACTATTT CTCCTCCCTC TGGGGCGGAT TGATGAACGC CAAGAAGTAA
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| Protein sequence | MKFRLFGGAV AVSVAALLTS PAVAFEGRSV VAPDCNYGGK IKSIVATDEH TVTFSMCSPD
PAFKAKAAFV PFGIQPAKHI EEAGPKKKLL DNPIGTGPFK LESWNRGDSI TMTRNENYWG
AKPAFDKLVF RWNQSGAGRL NELRSGTVDE ITNISPDDFD SVKNDPDLQF LPQESPNILY
LGMVNTAKPF DNEKVRQAIA MGIDRQRIVD NFYPKGSVVA SHFTPCSLPN GCAGKDWYGF
DASAAKKLLA DAGYPNGFKT KIYYRDVFRA YLPEPSVVAV EFQTQLKKNL GIDAEVVPIE
SGKFIDDTSA GRIDGLYLLG WGADYPHVTN FLDYHFGKTS KMFGTTFPEI TEGLTKGGTI
AETKTAEPIY AAVNDAIRQH VPMVPIVHGA AAYAARATLK NAIVRPFGSP LLQDSNPGKD
TLVFMQNAEP ISLYCGDETD GETLNACTPI TEALLDYAKD SGDIVPALAT SCDANADSTV
WTCKLRTGVK FTDGSDFTAN DVVVSWAAGI DASNPAHVGN TGSFDYFSSL WGGLMNAKK
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