| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5346 |
|---|
| Symbol | mdeA |
|---|
| ID | 7380703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 345838 |
|---|
| End bp | 347010 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648964 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547201 |
|---|
| Protein GI | 222106410 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CTCTCGATTA CCTGCAACAG GCATCGCTGA TTACGGCGCA TGATGAGGCC
AATGCTTATG ATGCGGTGGT GCCGCCGATT GTGCAGACGT CGCTGTTCAC CTTCAGCGAC
TATGACGAGA TGGTCGCGAC CTATCGCGGT GAAAAACTTC GACCGGTTTA TTCACGCGGG
CTGAACCCCA CCGTGCGGAT TTTTGAGGAT ATGCTGGCCA AACTGGAAGG CGCGGAAGAT
GCGCTGGCCT TTGCCAGTGG CATGGCGACG ATATCCTCGA CCGTCCTCAG CTTTGTCGAG
CCGGGAGATC GGGTCGTTGC CGTTCGCCAC CTCTATCCCG ATGCCTACAG GTTCTTTGAG
ACCATGCTGA AGCGCATGCG CATCGAGGTT ACTTATGTCG ATGGCCGCGA TGAGGATGCC
GTGGCCAAGG CGCTTCCGGG CGCAAAGCTT CTCTATCTGG AAAGCCCGAC CAGTTGGGTG
ATGGACGCCC ATGATGTTGG CGCGCTTGCC GCTCTTGCCA AACAGCACGG CGTGTTGTCG
ATGATTGACA ACAGCTGGGC AAGCCCGGTG TTCCAGAAGC CATTATCGCT CGGCGTCGAT
CTCGTCCTGC ATTCGGCCTC GAAATATCTC GGCGGTCACA GTGACGTTGT CGCCGGTGTG
GTGGCTGGCC CCAAGGAACT GATCAATCGT ATTCGCAATG AAACGCTGCC TTATCTCGGC
GGAAAACTGT CTCCCTTCGA TGCCTGGCTG CTGATCCGGG GCATGCGCAC ATTGCCGATC
CGCATGAAGG CGCATGAGGC CTCAGCGCTG GAGATTGCCC ATCGTTTGCA GGCGCTCGAT
ATCGTCGAAA AAGTCTGCCA TCCGGCGCTG AACAATGGCT TGCCGCCGGG CCTGCATGGC
ACGTCCGGGC TGTTTTCCTT CATCTTCAAG GATGTCATCC ATATTCAAAC CTTCTGCGAC
CATTTGAAAC TGTTCAAACT GGGCGTCAGT TGGGGTGGTC ATGAAAGTCT CGTCGTCCCC
GGCGATGTGG TGGCCAACCA GAAAGCGCCG CCGAGTTTCG CGGATGCCTT CGGCGTCGAT
CCGCTGTCTG TGCGTCTCCA TGTCGGGCTT GAGGGGACCG AGGCGCTGTG GAGCGATTTG
CAGGCGGCGA TGGCGGCGGC TCGAACAGAC TGA
|
|---|
| Protein sequence | MSDALDYLQQ ASLITAHDEA NAYDAVVPPI VQTSLFTFSD YDEMVATYRG EKLRPVYSRG
LNPTVRIFED MLAKLEGAED ALAFASGMAT ISSTVLSFVE PGDRVVAVRH LYPDAYRFFE
TMLKRMRIEV TYVDGRDEDA VAKALPGAKL LYLESPTSWV MDAHDVGALA ALAKQHGVLS
MIDNSWASPV FQKPLSLGVD LVLHSASKYL GGHSDVVAGV VAGPKELINR IRNETLPYLG
GKLSPFDAWL LIRGMRTLPI RMKAHEASAL EIAHRLQALD IVEKVCHPAL NNGLPPGLHG
TSGLFSFIFK DVIHIQTFCD HLKLFKLGVS WGGHESLVVP GDVVANQKAP PSFADAFGVD
PLSVRLHVGL EGTEALWSDL QAAMAAARTD
|
|---|
| |