Gene Avi_5346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5346 
SymbolmdeA 
ID7380703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp345838 
End bp347010 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content58% 
IMG OID643648964 
Producthypothetical protein 
Protein accessionYP_002547201 
Protein GI222106410 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGACG CTCTCGATTA CCTGCAACAG GCATCGCTGA TTACGGCGCA TGATGAGGCC 
AATGCTTATG ATGCGGTGGT GCCGCCGATT GTGCAGACGT CGCTGTTCAC CTTCAGCGAC
TATGACGAGA TGGTCGCGAC CTATCGCGGT GAAAAACTTC GACCGGTTTA TTCACGCGGG
CTGAACCCCA CCGTGCGGAT TTTTGAGGAT ATGCTGGCCA AACTGGAAGG CGCGGAAGAT
GCGCTGGCCT TTGCCAGTGG CATGGCGACG ATATCCTCGA CCGTCCTCAG CTTTGTCGAG
CCGGGAGATC GGGTCGTTGC CGTTCGCCAC CTCTATCCCG ATGCCTACAG GTTCTTTGAG
ACCATGCTGA AGCGCATGCG CATCGAGGTT ACTTATGTCG ATGGCCGCGA TGAGGATGCC
GTGGCCAAGG CGCTTCCGGG CGCAAAGCTT CTCTATCTGG AAAGCCCGAC CAGTTGGGTG
ATGGACGCCC ATGATGTTGG CGCGCTTGCC GCTCTTGCCA AACAGCACGG CGTGTTGTCG
ATGATTGACA ACAGCTGGGC AAGCCCGGTG TTCCAGAAGC CATTATCGCT CGGCGTCGAT
CTCGTCCTGC ATTCGGCCTC GAAATATCTC GGCGGTCACA GTGACGTTGT CGCCGGTGTG
GTGGCTGGCC CCAAGGAACT GATCAATCGT ATTCGCAATG AAACGCTGCC TTATCTCGGC
GGAAAACTGT CTCCCTTCGA TGCCTGGCTG CTGATCCGGG GCATGCGCAC ATTGCCGATC
CGCATGAAGG CGCATGAGGC CTCAGCGCTG GAGATTGCCC ATCGTTTGCA GGCGCTCGAT
ATCGTCGAAA AAGTCTGCCA TCCGGCGCTG AACAATGGCT TGCCGCCGGG CCTGCATGGC
ACGTCCGGGC TGTTTTCCTT CATCTTCAAG GATGTCATCC ATATTCAAAC CTTCTGCGAC
CATTTGAAAC TGTTCAAACT GGGCGTCAGT TGGGGTGGTC ATGAAAGTCT CGTCGTCCCC
GGCGATGTGG TGGCCAACCA GAAAGCGCCG CCGAGTTTCG CGGATGCCTT CGGCGTCGAT
CCGCTGTCTG TGCGTCTCCA TGTCGGGCTT GAGGGGACCG AGGCGCTGTG GAGCGATTTG
CAGGCGGCGA TGGCGGCGGC TCGAACAGAC TGA
 
Protein sequence
MSDALDYLQQ ASLITAHDEA NAYDAVVPPI VQTSLFTFSD YDEMVATYRG EKLRPVYSRG 
LNPTVRIFED MLAKLEGAED ALAFASGMAT ISSTVLSFVE PGDRVVAVRH LYPDAYRFFE
TMLKRMRIEV TYVDGRDEDA VAKALPGAKL LYLESPTSWV MDAHDVGALA ALAKQHGVLS
MIDNSWASPV FQKPLSLGVD LVLHSASKYL GGHSDVVAGV VAGPKELINR IRNETLPYLG
GKLSPFDAWL LIRGMRTLPI RMKAHEASAL EIAHRLQALD IVEKVCHPAL NNGLPPGLHG
TSGLFSFIFK DVIHIQTFCD HLKLFKLGVS WGGHESLVVP GDVVANQKAP PSFADAFGVD
PLSVRLHVGL EGTEALWSDL QAAMAAARTD