Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5238 |
Symbol | |
ID | 7381364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 236944 |
End bp | 238167 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643648876 |
Product | hypothetical protein |
Protein accession | YP_002547113 |
Protein GI | 222106322 |
COG category | [S] Function unknown |
COG ID | [COG4102] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.261705 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTTTGCG AAAACCTCTC CCCCACCCGC CGCGCCGTTC TCGGCACATC CGGTGCCTTG TTTGCCTGGG CCTTCATGCC CCGCTTTGCC CATGCGGCTG GCGGACGCGA TCCCCGCTTT GTCACCATCA TCCTGCGCGG CGCGCTGGAT GGGCTGACCG CCGTACCGCC CATCGGTGAT CCCGATTATG AGGGCCTGCG CCAGTCAATC GCGCTGAGGC TGGATGGCGA CAAGCCGGTG CTGCCGCTCG ACGGCTTTTT CGGATTGCAT CCCTCGATGC CGAATTTCCA ACGCCTGTTC CGCGCCAATC AGGCCGCCGT AGTCCATGCC AGTGCCACCG CCTACCGTGA GCGCTCGCAT TTCGATGGAC AGGATGTGCT GGAATCCGGC TTTCCGACGC CCGGACATGT CGAAACCGGC TGGATGAACC GAATGCTGGA GGGATTGCCA GCTGGGGACA AGATTGCTCC CGGTGCGGCA GAGCGCGTGC AGGGGCTTTC CGTAGGAGCA ACCGCGCCCT TGGTCATTCG CGGCAAGGCA CCTGTGCTCG GCTGGGCACC GTCCGTACTG CGACCCGCCG ATGGCGACCT TGCGCCACGC CTGATGGACC TTTATGGCCG CACGGACCCG ATGCTGTCGA AACTTTTGAT TGAAGGCATC CAGACCGGCA AGATCGCATC CGGCCTCGAC ATGAAGTCGA AAGGCGGCCC CGGCGACCCG AACGGCATGG AGCAAATGGC CCGCGGCGCT GCCCGGTTGC TAGCCCAACC GGATGGCCCG CGTGTCGCAG CACTTGCCTT CGAGGGTTGG GACACGCACG CGCAGGAAAT CGACCGGTTG GCAAAGCTTC TGGCTGGCCT CGACAAGTCT ATTGCCGCCT TCGAACAGGA ACTTGGACCC GCATGGAAGG ATACGGCGAT CATCGTTGCA ACGGAGTTCG GTCGCACGGC ACGGATCAAC GGCACTGATG GAACCGACCA CGGCACCGGC ACGACCGCCT TCCTCGCTGG CGGTGCCGTG CGGGGTGGCC GCATCATCAC CGACTGGCCG GGGCTGAAGC AGAACCAGCT GTTCGAAGGC CGGGATCTGG CCGCCACCAC CGACATTCGC GCCGTGATCA AAGGCATGGC GGTCGATCTT CTTGGCGCCA GTGCCGGTCA TCTGGCCAGT GTTGTGTTTC CAGGCTCGGA CAGTGTTCAG CCGATGAAGG GCTTAATCGT CTAA
|
Protein sequence | MLCENLSPTR RAVLGTSGAL FAWAFMPRFA HAAGGRDPRF VTIILRGALD GLTAVPPIGD PDYEGLRQSI ALRLDGDKPV LPLDGFFGLH PSMPNFQRLF RANQAAVVHA SATAYRERSH FDGQDVLESG FPTPGHVETG WMNRMLEGLP AGDKIAPGAA ERVQGLSVGA TAPLVIRGKA PVLGWAPSVL RPADGDLAPR LMDLYGRTDP MLSKLLIEGI QTGKIASGLD MKSKGGPGDP NGMEQMARGA ARLLAQPDGP RVAALAFEGW DTHAQEIDRL AKLLAGLDKS IAAFEQELGP AWKDTAIIVA TEFGRTARIN GTDGTDHGTG TTAFLAGGAV RGGRIITDWP GLKQNQLFEG RDLAATTDIR AVIKGMAVDL LGASAGHLAS VVFPGSDSVQ PMKGLIV
|
| |