Gene Avi_5237 details

Gene Information

• Locus tag: Avi_5237
• ID: 7381363
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 236171
• End bp: 236833
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643648875
• Product: hypothetical protein
• Protein accession: YP_002547112
• Protein GI: 222106321
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0560] Phosphoserine phosphatase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGACA TCGAGTCTGC TGTTTTTGAT CTTGATGAAA CATTGCTCAA CTGGGATTCA 
ACCGCCGCCT GGATTCTGGA GCGGGTGGGT CAATCAGGCT GGCGCTTTGT GCTTGCGGCA 
TTGGCATTGC CTTTCGCCGG TCCATTGATT GTGTTTCCGC CGCTGCGGCG CTGGGGAACC 
TCGGTCTTTC TCTGGATCGC CACGTTCGGA CTTTCCGAAC ATGCCTTGAA AGTCTCTTTC 
GTGCGTTTTG CCGACAGGGT TAACGCAGGC AAACAGCCAA GGCTAGCCTG GCATGAGAAA 
GGCCTGGCCG AGCTTCGGCA TTATTTGAAC CAAGGCAGTC GGGTGGCCGT CGCAACCGGA 
GCGCCGCTGT GGATTGCTGC GCCGTTTGCA GCGTGCATAG ACAGTCGTAT TCAGGTGGTT 
GGATCGGGAT TACACCGCGT TCTCGGTGGC TGGGTTCTCA GCGATCATTG TCGCCATGAA 
AGAAAATGCA CAGCGCTTGG CGGCATAGGA TTTCAGGGGA GATGGACTGC GGCCTACACG 
GACAGCTTAG ATGATCTGCC GATTTTAATG CGGGCGACAC GGGCGTTTGC CATTAATAGT 
TCCTCCAGGA AAAGAAAGAA ATTCGACGCC AACGGATTGA ATATTCAGTA TTTGAACTGG 
TGA 

 

Protein sequence

MQDIESAVFD LDETLLNWDS TAAWILERVG QSGWRFVLAA LALPFAGPLI VFPPLRRWGT 
SVFLWIATFG LSEHALKVSF VRFADRVNAG KQPRLAWHEK GLAELRHYLN QGSRVAVATG 
APLWIAAPFA ACIDSRIQVV GSGLHRVLGG WVLSDHCRHE RKCTALGGIG FQGRWTAAYT 
DSLDDLPILM RATRAFAINS SSRKRKKFDA NGLNIQYLNW