| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5212 |
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| Symbol | |
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| ID | 7381342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 208556 |
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| End bp | 211660 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643648854 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_002547091 |
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| Protein GI | 222106300 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGAAC AATCATCCCA GTCGCGTCCC CGTTTCAATT TGTCGAAATG GGCGCTCGAC
CATCAATCGC TTGTCATCTT CCTGATGCTT GCCGCAGTCC TCAGTGGCAT CCTCAGCTAT
CAAAAGCTTT CGCGCAACGA AGATCCACCC TTCACCATCA AGACGATGGT TGTCGGTGCC
CGCTGGCCAG GCGCCAGTGC AGCCGACACC GTCAATCTGC TGACCGACAA GCTTGAAAAG
AAGCTCTCGG AGACGCCACA TCTCGATTAC ACGCAAAGCT ATACCAGGCC CGGCCAGTCG
GTCATCATGG TCAACCTGCG TGACGACACC CCGCCCAGTG AGGTCGAGGG CGTCTGGTAC
ACGGTTCGCA AAAAAATGGC GGACATTTCC TCGATATTGC CGGAGGGGGT CGAAGGACCA
GCTTTCGACG ATGAATTCGG CGATACGTAT GGAAGCATTT ATGCGTTTCG TGCGGAGGGC
TTTAGTCAAC GCGAACTGCG TGACCGCGTG GAGGCAATCC GCAGTGAAAT CCTCTCCCTG
CCTGACATCG GCAAAGTCAA CATTCTCGGT GCGCAGGACG AACAGATCGT CATCGAATTC
TCGCAGAGCA AGCTTGCCAG CCTGGACATC GATCCGTCCA GCGCAATCGA AGCCATCCGT
GCCCAGAATT CCGTCAATCC GATTGGAACA GTCCAGACCA GTGAAGAGAA TATCTCGGTT
CGCGTCACCG GAGCGTTTGC CTCCGAAGAC AGCCTGAAAG ACATCACGTT AAAGCTTGGC
AGCCGATATT TCCGGCTCGA CTCCATCGCG ACGATCTCCC GCACGATCAC CGATCCGCCC
GCCGCCTCGG TGCGCGTCAA CGGAAAGGAG GTCATTGCTC TGGCCGTTTC GATGGCAAAG
GATGGAAACC TTCTCTCTTT CGGCGAGGCC CTGAAAGATC GCATGCACGC GATTGCCTCA
AAGCTTCCCT ACGGGATCGA GATGATCCAG GTCGCGGATC AATCGACGGT CGTGAGGGAT
GCCGTCAACG GTTTCATGAA AGTTCTGGTG GAGGCGATCA TTATCGTACT GGCCGTTTCC
TTTATATCCT TGGGGGCAAG GGCCGGGTTG GTTATCACCG CGTCCATTCC TCTCGTTCTT
GCCCTGACAT TCCTTGGCAT GGAGTTGACC GGCGTTGGAC TTCAGCGAAT TTCGCTGGGT
GCTTTGATCA TTGCGTTGGG CCTGCTGGTG GATGATGCGA TGATCACCGT CGAAAGCATG
GTCTCCTGCC TTGAAAAGGG CAGGTCGCGT CTGGTCGCGG CAACCCATGC CTATGAGACG
ACCGCATTTC CAATGCTGAC CGGCACATTG GTGATGATCG CTGGCTTCAT TCCGGTGGGT
TTTGCCGCCT CAAGTGCTGG AGAATATACC TTCTCTCTGT TCATGGTGAT CCTGATTGCT
CTGTCATCGT CCTGGATCGT TGCCGTGCTG TTTTCGCCGA TCCTTGGCAC CTGGATATTG
CCCCGCAGCC TCGCGCATAC CCATAAGAAG ACGGGTATCG TCATGGCCAC CTATCGCAAA
ATACTGGGCT GGAACCTTCA GCATCGGTGG TTGACGATCC TGTTTGCGGT TGCCGCTTTT
GCCCTGTCCC TTGCTGGGCT CGGGCAATTG AAGCAGCAGT TCTTCCCGGC TTCCGATAGA
CCGGAACTGC TGGTCGGTCT TACGCTTCCG CAAAATGCAT CGCGGGCCGC GACAGACATC
CGTGCGCGCG AATTGGAAGC GGTCTTGCGA ACCGACCGCG ACATCGATCA TTTCATCACC
TATGTCGGCT CAGGCTCCAT TCGCTTTTAT CTGCCAATGG ATCTGCAACT CGACAACGAT
AATGTTACGG AAACCGTGGT CGTCGCCAAA AGCGTCGAAA AACGGGAGGC CGTCCGCCGC
AAGATCGAAG CTGTGCTCAA TGAGCGTTTT TCGGATCTCG TCACGCGCGT TTCGCCTCTT
GAACTCGGTC CTCCCGTCGG ATGGCCGCTG AAGTTTCGGG TTTCGGGGCC GGACTATCAG
CAGGTCCGTG CCCTGTCGGC AAAAGTCGCT GCGATCATCG GTCAAAATCC AGATACCCGT
GACGTCAATC TCACGGCGGG TGAACCGCAG AAAAGCGTGA CGATCAAGGT GAACCAGATC
GAGGCCCGTG CCTTGGGCAT GAGTTCGGAA TCGATCGCCA GTGAGATTGC GGCGGTCTTC
TCGGGGTCGA AAGTCACCAC GGTTCGTGAC AAAGACAAAC TCGTTGATGT CATGGTCAAA
GGGGTTGAGG CTGACCGTAA CTCGGTATCG ACCACAGGCA ATCTGGAACT GCGCACCGGC
GATGGAAACT ATGTGCCGCT TCGGCAAGTC GCTTCGGTCG CCTATGGGAT GGAAGACCCG
ATCATCTGGC GCCAGCAAGG AAAGCCGATG ATTATTGTTC AGGCTGATGT TCAAAAGAAT
GCCTTGGCCG CCACGGTCGC CATGCAGGCC GATGCCCAGC TTAATGCTCT GCGCTCAGAG
CTTCCCATGG GGTACTCCAT TATTGCGGGC GGCATCACGG AAGAATCCGA GAAAGGCAAT
TCGTCAATCT ATGCCGTTAT TCCTGTGATG CTGTTTGCCA TTGCAGTTCT GTTGATGGTC
CAGATGCAGA GCTTTTCCAG AATGGCCTTG GCTGTGTTCA TGGCGCCTTT TGGTCTCATT
GGCGTGGTTG CAGCTATGTG GCCGACCGGC ACGCCCATGG GCTTTGTTGC GCAACTCGGT
GTCATCGCCT TGTCCGGGAT GATCATTCGC AACGCTGTCA TCCTCATTCA GGAGATTGAC
CAGAACGTCG CGCTTGGCCA ATCGCCAAAA GACGCCATCA TCGCCGCCTC GATCCATCGC
GCCCGTCCGA TTGTTCTGAC CGCCTGTGCC GCAATTCTCG GCATGATCCC GATTGCAGCC
GAGATTTTCT GGGGCCCCAT GGCCTTTGCG ATCATTGGCG GGCTTGCGGT GGCAACCATG
CTGACCCTGA CGCTGCTGCC TTGTGCGATG TCGTTGTTGC TGAATGCCGA ACACAAGGCG
CGATCGAAAA CTGACTCGGA CGGCAAAGCG GAGGTTCAAC CGTGA
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| Protein sequence | MSEQSSQSRP RFNLSKWALD HQSLVIFLML AAVLSGILSY QKLSRNEDPP FTIKTMVVGA
RWPGASAADT VNLLTDKLEK KLSETPHLDY TQSYTRPGQS VIMVNLRDDT PPSEVEGVWY
TVRKKMADIS SILPEGVEGP AFDDEFGDTY GSIYAFRAEG FSQRELRDRV EAIRSEILSL
PDIGKVNILG AQDEQIVIEF SQSKLASLDI DPSSAIEAIR AQNSVNPIGT VQTSEENISV
RVTGAFASED SLKDITLKLG SRYFRLDSIA TISRTITDPP AASVRVNGKE VIALAVSMAK
DGNLLSFGEA LKDRMHAIAS KLPYGIEMIQ VADQSTVVRD AVNGFMKVLV EAIIIVLAVS
FISLGARAGL VITASIPLVL ALTFLGMELT GVGLQRISLG ALIIALGLLV DDAMITVESM
VSCLEKGRSR LVAATHAYET TAFPMLTGTL VMIAGFIPVG FAASSAGEYT FSLFMVILIA
LSSSWIVAVL FSPILGTWIL PRSLAHTHKK TGIVMATYRK ILGWNLQHRW LTILFAVAAF
ALSLAGLGQL KQQFFPASDR PELLVGLTLP QNASRAATDI RARELEAVLR TDRDIDHFIT
YVGSGSIRFY LPMDLQLDND NVTETVVVAK SVEKREAVRR KIEAVLNERF SDLVTRVSPL
ELGPPVGWPL KFRVSGPDYQ QVRALSAKVA AIIGQNPDTR DVNLTAGEPQ KSVTIKVNQI
EARALGMSSE SIASEIAAVF SGSKVTTVRD KDKLVDVMVK GVEADRNSVS TTGNLELRTG
DGNYVPLRQV ASVAYGMEDP IIWRQQGKPM IIVQADVQKN ALAATVAMQA DAQLNALRSE
LPMGYSIIAG GITEESEKGN SSIYAVIPVM LFAIAVLLMV QMQSFSRMAL AVFMAPFGLI
GVVAAMWPTG TPMGFVAQLG VIALSGMIIR NAVILIQEID QNVALGQSPK DAIIAASIHR
ARPIVLTACA AILGMIPIAA EIFWGPMAFA IIGGLAVATM LTLTLLPCAM SLLLNAEHKA
RSKTDSDGKA EVQP
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