Gene Avi_5142 details

Gene Information

• Locus tag: Avi_5142
• ID: 7380945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 132809
• End bp: 134881
• Gene Length: 2073 bp
• Protein Length: 690 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643648798
• Product: hypothetical protein
• Protein accession: YP_002547035
• Protein GI: 222106244

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0964309
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCAGA ATTCATTGCG TCCATTGCGC TATCGTCAAA TTCATCTCGA TTTTCACACA 
TCCGAGCATA TTCCGGGCAT TGGCAGCCAG TTTGACGCTG AAGCGTTCGT TGACACGTTG 
AAGCAGTCGC ATGTCAATTC CATCACGCTG TTTGCCAAAT GCCACCATGG CTGGTCTTAT 
TATCCGACCA AGGTGGGTGC GCCGCATCCC AATCTGTCTC GCCCCGATCT GCTGGGGGAG 
ATGATTGCCG CCTGCAACGC TGCTGATATT GAAACGCCGA TCTATCTCTC GGTGCAGTGG 
GATGAGCGGA CCGCCCGCCT GCATCCCGAA TGGCGGGTGA TGAAGGCCAA CAATCATCTT 
GACCATGCCG ATGACCATGA TCGTTCGGCC CAGAAGCAGT TAAGCGCCGC CTGGCACACC 
TTGTGCCTCA ACCACGATGA TTTTCGCAGC CACTTGATGG CCGAAGCCCG AGAGGTTCTG 
ACGCTTTATC CGACTGCCGG GCTGTTCTTC GACATTATCC AGACGCCGGA TTGTGTCTGC 
AATGCCTGCC TTGCGCGCAT GGCACGCCTC AATCTCGACC CGTTGAACAA GGTGGATCGG 
TTGGCCAATG ACGAGGCTGT CAATGCGCAG TTCCGCGAAG AGATGAGCAC CGTTCTGCGG 
CGCGAATTTC CGCAATCGCG GATCTTTTAC AATAGCGGCC ATATCAACAA ATATGGCAAG 
GACCGTTTCG CGCCCTACAC CCATCTTGAA CTGGAAAGCC TGCCCACGGG CGGCTGGGGC 
TATAATCACT TTCCCTCCAG CGCCCGCTAT GCGGCGCGGC TTGGCCTAGA TTTTGTCAGC 
CACACCGGCA AATTCCACAC CAGTTGGGGC GAGTTTGGTG GCTTCAAACA TCCTGATGCG 
CTGGAATACG AATGTGCCAT GATGGTGGCG CTTGGCTCCA AGTGCCTGGT TGGCGATCAG 
CTCCATCCCA ATGGCCGGAT CAATGCCGAT ACCTATCGCA GCATCGCCCC AGCCTTTCGC 
CGGGTTGCCG CTCTTGAACC CTTTCTGGAC GGGGCGCAAC AGGTCTCTGA GATCGCCATT 
CTCGCCACCG AATATTTCCA TCGGGACGGT GTGGAGCGTG TGCGCGATAG CGATGACGGA 
GCGGTGCAGA TGCTGCTGGA ATTGCACAGA TGTTTCGATG TGATTGACCC GGAGATGGAT 
TTTTCCCGCC ATCGCCTGAT TATCTTACCC GATACGATCC CGGTGGATGC TGCATTAAAG 
GCAAAATTCG ATGCCTATCT CGCTTCGGGT GGCGCGGTCC TCATTTCCGG TCAATCCGGC 
CGCATACCGG ACAGCGGCGC TTTTGCCTTT GAGACGGGCC TAACACTCAC AGGCGAAAAC 
ATCGCCTTCG AGCCATCCTA TGCGCAGATC ACCGAAGCAT TGACCGATGC GCGCCTGCCG 
GCAAGCCCCT TCGTGGTCTA TGCCGAGGCC GAAAAACTGC AAGCGGCGGG CGCCACTGTT 
CTGGCAAGCA TAAGGCCGCC CTATTTCAAT CGTGCCTTCA ACCATTTCTG CTCGCATCAG 
CATACGCCTG ACGATCCTGA GGCCGATTCT ATTGGCGTGG CCTGCGCCAT GCATGGCAAG 
GTAGGCACCA TCGCCTATCC GGTCTTTGCA CTTTACCGTG CCATGGGACA GCCTCTCTAC 
AAATATCTGG TCGATGCGCT GATCGAACGG CTAATGCCGG GGCGGGTGCT TGAAACCACT 
TTGCCCTCCG CAGGACGCGC GACGCTGACG GTGCAGGCCC ATGAAAATCG CAGCATCGTT 
CACCTTCTCT GCGGTTTTCC GCAAATCCGC GGTCAATCGG TGCGGATCAA TTGGCAGCCA 
ACAGCAAGAC CCATGGAGAT GATCGAGGAT ATTACCTCCA TCGGGCCGGT ATCCTTCACG 
GTCCGGCTGC CTGGGACGCC ATCATCGGTC TATGATGCGA TTTCGGGCGA GACATTTGCT 
TGGAAAAAAC AAGCAGATGG CGCAATCACG GTTGATCTGC CAGGCCTTTC CATTCACCGT 
GCGATTGTTA TTGACGGAAT GGCACCCGGA TGA 

 

Protein sequence

MSQNSLRPLR YRQIHLDFHT SEHIPGIGSQ FDAEAFVDTL KQSHVNSITL FAKCHHGWSY 
YPTKVGAPHP NLSRPDLLGE MIAACNAADI ETPIYLSVQW DERTARLHPE WRVMKANNHL 
DHADDHDRSA QKQLSAAWHT LCLNHDDFRS HLMAEAREVL TLYPTAGLFF DIIQTPDCVC 
NACLARMARL NLDPLNKVDR LANDEAVNAQ FREEMSTVLR REFPQSRIFY NSGHINKYGK 
DRFAPYTHLE LESLPTGGWG YNHFPSSARY AARLGLDFVS HTGKFHTSWG EFGGFKHPDA 
LEYECAMMVA LGSKCLVGDQ LHPNGRINAD TYRSIAPAFR RVAALEPFLD GAQQVSEIAI 
LATEYFHRDG VERVRDSDDG AVQMLLELHR CFDVIDPEMD FSRHRLIILP DTIPVDAALK 
AKFDAYLASG GAVLISGQSG RIPDSGAFAF ETGLTLTGEN IAFEPSYAQI TEALTDARLP 
ASPFVVYAEA EKLQAAGATV LASIRPPYFN RAFNHFCSHQ HTPDDPEADS IGVACAMHGK 
VGTIAYPVFA LYRAMGQPLY KYLVDALIER LMPGRVLETT LPSAGRATLT VQAHENRSIV 
HLLCGFPQIR GQSVRINWQP TARPMEMIED ITSIGPVSFT VRLPGTPSSV YDAISGETFA 
WKKQADGAIT VDLPGLSIHR AIVIDGMAPG