| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5057 |
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| Symbol | ilvD |
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| ID | 7381214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 49408 |
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| End bp | 51144 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643648728 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002546965 |
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| Protein GI | 222106174 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCA AGAAAACGCC TGAAACGCTG CGTAGCGCCC GCTGGTTCGC CCCCGACGAT
CTGCGCAGTT TCGGTCACCG GTCCCGCATG ATGCAGCTCG GCTACGCGGA AGAGGATTTC
CGCGACAAGC CGGTGATCGG CATCCTCGAC ACCTGGTCCG AACTCAACAC CTGTCACGCC
CATTTCAAGG AGAGGGTGCA GGACGTGAAG CGCGGCGTCA CCCAGGCCGG TGGCTTTCCG
GTCCAGATGC CCTCGCTGTC CGTCGATGAA AGCTTCACCA AGCCAACCTC CATGCTCTAC
CGCAACATGC TGGCGATGGA GACGGAGGAA ATGATCCGCT CGCATCCGCT CGACGGCGTG
GTGCTGATGG GCGGTTGCGA CAAAACCACG CCCGGTCTGG TGATGGGTGC GATCTCGGTT
GGTGTGCCGA TGATTTACCT GCCAGCCGGG CCGATGCTGC GCGGCAATTA TGCCGGCAAG
ATCCTGGGTT CCGGTTCGGA TGCCTGGAAA TATTGGGACG AGCGGCGCGC CGGTCATATT
TCAGACGCGG AATGGCTTGG TATTCAGGGC GGCATCGCCC GTTCAGCCGG CACCTGCATG
ACCATGGGTA CGGCCTCGAC CATGACGGCA ATCGCCGATG CTATGGGCCT CACCCTGCCG
GGTGCGTCCT CAATCCCCGC GGTCGATGCC AATCACCAGC GCATGTCGGC CTCCTGTGGC
CGCCGCATCG TCGAGATGGT CTGGGAAGAC CTGACACCGG ACCAGATCAT CACCGACGCC
GCCTGCCGCA ACGCCGCTAT CGTCGCCATG GCCACCGGCT GTTCCACCAA CGCCGTCGTT
CACCTGATTG CCATGGCCCG CCGGGCCGGT GTCGATCTCA CCCTCGATGA CCTCGACGCG
CTGGGCCGCG TCACACCGTT GATCGCCAAT GTCCGCCCGT CCGGCAAGGA TTACCTGATG
GAGGATTTTT TCTATGCGGG CGGCCTGCGC GCCTTGATGA AACAGCTCGA AGAACGGCTT
GACCTTTCAG CCATGACCGT CACCGGGAAA ACCATGGGCG AAAATCTCGA GGGCGCAGAG
GTTTATAACG ACGACGTCAT CCGGCCGCTG TCCAATCCGG TCTATCACCA AGGCTCGCTC
GCCGTGTTGC GGGGTAATCT CTGCCCTACC GGCGCGGTCA TCAAACCGGC GGCCTGCGAT
CCGAAATTTC ACGTCCACCA AGGCCCGGCA CTGGTGTTCG ACAGCTATCC CGAGATGAAG
AAAGCCATCG ACGACGAACA TCTCGACGTG ACCCCCGATC ATGTTCTGGT GTTGCGCAAT
GCCGGGCCGC TGGGGGGGCC GGGCTTTCCT GAATGGGGCA TGCTGCCGAT CCCCAAGGCG
CTGATCAAAC AGGGCCATCG CGACATGCTG CGGATCTCGG ATGCCCGCAT GTCCGGCACA
TCTTACGGCG CCTGCGTGCT GCATGTCTCG CCGGAAAGCT ATATCGGCGG GCCGCTGGCG
TTGTTGCGGA CCGGCGACAT CGTCCGGCTG GATCTTCCCA ATCGCAGTCT GGACATGCTG
GTCGATGACG CGGAACTCGC CCGCCGCAAG GCCGCATGGA CGGCACCGGA ACCGCATTTC
CAACGCGGCT ATGGCTGGAT GTTCTCCCGC CATGTGACGC AGGCCGACAA GGGCTGCGAT
TTCGATTTCC TTGAAACCGG CTTCGGCAAA TCGGCTGGTG AGCCGGATAT CTATTAA
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| Protein sequence | MTSKKTPETL RSARWFAPDD LRSFGHRSRM MQLGYAEEDF RDKPVIGILD TWSELNTCHA
HFKERVQDVK RGVTQAGGFP VQMPSLSVDE SFTKPTSMLY RNMLAMETEE MIRSHPLDGV
VLMGGCDKTT PGLVMGAISV GVPMIYLPAG PMLRGNYAGK ILGSGSDAWK YWDERRAGHI
SDAEWLGIQG GIARSAGTCM TMGTASTMTA IADAMGLTLP GASSIPAVDA NHQRMSASCG
RRIVEMVWED LTPDQIITDA ACRNAAIVAM ATGCSTNAVV HLIAMARRAG VDLTLDDLDA
LGRVTPLIAN VRPSGKDYLM EDFFYAGGLR ALMKQLEERL DLSAMTVTGK TMGENLEGAE
VYNDDVIRPL SNPVYHQGSL AVLRGNLCPT GAVIKPAACD PKFHVHQGPA LVFDSYPEMK
KAIDDEHLDV TPDHVLVLRN AGPLGGPGFP EWGMLPIPKA LIKQGHRDML RISDARMSGT
SYGACVLHVS PESYIGGPLA LLRTGDIVRL DLPNRSLDML VDDAELARRK AAWTAPEPHF
QRGYGWMFSR HVTQADKGCD FDFLETGFGK SAGEPDIY
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