| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4267 |
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| Symbol | thiP |
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| ID | 7386515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3585790 |
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| End bp | 3587418 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643652930 |
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| Product | thiamine transporter membrane protein |
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| Protein accession | YP_002551102 |
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| Protein GI | 222150145 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | [TIGR01253] thiamine ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTCG CACGGCAAAA TCTGCTGCCG ATTGCTGGCG GGATCATCGG CCTTGCCGGG
CTTTTTGCCT TTATCGGATT GGCGGTCTTC GCCCTGCTGC TCACAACCGG TGGCCATCTG
CCGCTGGCGC TGGACAGTTA CACCCTGTCC ATCCTGCGCT TCACCCTGGT GCAGGCCGGG
CTATCGACTT TGCTGTCCAT TACCTTTGCC CTGCCGGTGG CTCTGGCCCT GGCGCGGCAA
AGGCATTTCT GGGGCCGTCG CTGGCTGATC CGGCTGATGG CGCTGCCCAT GGGTCTACCG
GTGCTGATCG GCGCCTTGGG CCTGATTGGC ATCTGGGGTC GCAACGGGTT TGCCAATGAT
CTGCTGGCGC TGCTCGGCCG TCAGACACCG GTCAGCATTT ACGGCCTGAC CGGCATTCTC
ATTGCCCATG TGTTTTTCAA CATGCCCTTG GCATGCCGCC TGCTGCTTGC CGGGCTGGAG
CGGGTGCCAC CTGATTATTG GCGCATGGCG GCCAGTCTTG GCATGGGTCC GGTTGCGATT
TTCCGGATGA TCGAATGGCC AGCCCTCAGC CCCTTACTTC CCGGCATCGC CGGGCTGATC
TTCATGCTCT GCGCCACGAG TTTCACGCTG GTGCTGACGC TGGGCGGCGG GCCGGGCGCA
ACCACGCTGG AAGTGGCGAT CTATCAGGCC TTGCGCTTTG ATTTCGACCC GCCCCTTGCC
GTCTCTCTGG CAACCCTGCA ACTGGCTGTC ACGGCCCTGT TGCTTGGCCT TTTGGCACTG
TTTCCAGCAC CGGACGACCA GGCATTGCCC GATGAAAGAC CTGTGTTGCG GCTCGATGGC
AAGGGACTGG CAGCGCGGGT CTGGGATGGG GTTGTGCTGC TGCTTGCCCT GTTTTTCCTG
GTCACGCCCC TTGCCAATAT CGCTTTTGCC GGCGTCAAAG CCGATCTCCT GAAACTGCTT
GATGATCCCT CGGTCTGGCG GGCTGGCGGT CTTAGCCTTG CGATCGCCTT TCCCGCCGCC
CTGCTGGCGC TGGGTCTCAG CCTCCTCTTC ATCAATGCCA GGACAGCACT ATCCGGCCTG
CGGCAAAAAA CCCTGGTCGC AACCACTCTT TCCCGGCTGA TTGGCGCAAC ATCATCGCTG
GTGCTGCTGG TGCCGGTCAT CGTGCTGGCC ACCGGCTGGT TCCTGCTGCT GCGCCAGATG
GGCAATGCGG CAGGGTTTGC CGGGCCGGTG GTGGTGGCGA TCAACGCGAT CATGGCGCTG
CCCTTTACCA TGCGGGTCTT GGCACCGGCC ATCGCCACCC ATCATCACCG CACGGCGCGC
CTGTCTGCAA GCCTTGGCCT TGGCGGACTG GCCAAGATCC GCCATGTCGA CTGGCCGGGC
CTGCGTCGTC CGATCCTGAC GGCCCTGTCC TTTGCCATGG CACTATCGCT TGGAGACCTT
GGGGCGGTGG CCCTGTTCGG TGCCAATAAT CTGGCGACTT TGCCGTGGCT GATCTATAGC
CGGATGGGCA GCTACCGCAC CGCCGATGCC GATGGTCTGG CCCTGCTGCT CGGCCTTGTC
TGCCTTGTGC TGACCATGAT TGGAACGGCG GGCGGCTCAA GTGCTGACAA ACCGGAGGAG
CGACCATGA
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| Protein sequence | MALARQNLLP IAGGIIGLAG LFAFIGLAVF ALLLTTGGHL PLALDSYTLS ILRFTLVQAG
LSTLLSITFA LPVALALARQ RHFWGRRWLI RLMALPMGLP VLIGALGLIG IWGRNGFAND
LLALLGRQTP VSIYGLTGIL IAHVFFNMPL ACRLLLAGLE RVPPDYWRMA ASLGMGPVAI
FRMIEWPALS PLLPGIAGLI FMLCATSFTL VLTLGGGPGA TTLEVAIYQA LRFDFDPPLA
VSLATLQLAV TALLLGLLAL FPAPDDQALP DERPVLRLDG KGLAARVWDG VVLLLALFFL
VTPLANIAFA GVKADLLKLL DDPSVWRAGG LSLAIAFPAA LLALGLSLLF INARTALSGL
RQKTLVATTL SRLIGATSSL VLLVPVIVLA TGWFLLLRQM GNAAGFAGPV VVAINAIMAL
PFTMRVLAPA IATHHHRTAR LSASLGLGGL AKIRHVDWPG LRRPILTALS FAMALSLGDL
GAVALFGANN LATLPWLIYS RMGSYRTADA DGLALLLGLV CLVLTMIGTA GGSSADKPEE
RP
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