| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4225 |
|---|
| Symbol | yafB |
|---|
| ID | 7386981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3554059 |
|---|
| End bp | 3554889 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643652899 |
|---|
| Product | oxidoreductase |
|---|
| Protein accession | YP_002551072 |
|---|
| Protein GI | 222150115 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0656] Aldo/keto reductases, related to diketogulonate reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGATC AATCCTACAT TTCCTTTTCC GACGGCAACA GCATCCCGCA GGTGGGTCTC
GGCGTCTGGC AAACACCCAA TAGCGAAGCG GCACCTGCGG TACGGTCCGC GCTGTCGGCG
GGTTATCGCC ATATCGATAC GGCTGCTGTC TATGAAAACG AGGAGGGTGT CGGCGAAGGC
ATCCGCTCGT CCGGCATCGA CCGCGGCGAT ATTTTCCTGA CCACCAAGCT GTGGAACAAT
GAGCAGGGCT TCGACAACAC CCTCAAAGCC TTCGATGCCA GCCTGAAGCG GCTTGGCACT
GATTATGTCG ATCTCTACCT GATCCATTGG CCATCACCGC ATCGCGGCCT GTTTGTCGAG
ACCTGGAAGG CCTTTATTCA ATTGAAGGAG GAGGGCAGGG CGCGCTCCAT CGGCGTGTCG
AATTTCTATC CGGAGCATCT GAAGACGATC ATCGATGAAA CCGGCGTGGT GCCTGTCATC
AACCAGATCG AACTGCATCC GGATTTCCAG CAGAAACAAG CCCGCGAATT CCACCAGGCC
CACAATATCG TGACCCAGTC CTGGAGCCCA CTTGGCCAGG GCAAGCTGTT GGACAATCCG
GTGATCGGTA AGATCGCTAC CAAGCATGGC CGCACGGCAG CCCAGATCAT CATCCGCTGG
CATATCGAAA GCGGGCTTGT GGTGATCCCG AAATCCGTCA CGCCCTCGCG CATCGAGGAA
AATTTCAAGG TGTTCGATTT CAGCCTTGAT CCACAAGACA TGACTGAGAT CGCTGCGCTC
GATAGCTCAT CGACCCGCAT TGGACCCGAT CCGATGACCG CCAGCTTCTG A
|
|---|
| Protein sequence | MADQSYISFS DGNSIPQVGL GVWQTPNSEA APAVRSALSA GYRHIDTAAV YENEEGVGEG
IRSSGIDRGD IFLTTKLWNN EQGFDNTLKA FDASLKRLGT DYVDLYLIHW PSPHRGLFVE
TWKAFIQLKE EGRARSIGVS NFYPEHLKTI IDETGVVPVI NQIELHPDFQ QKQAREFHQA
HNIVTQSWSP LGQGKLLDNP VIGKIATKHG RTAAQIIIRW HIESGLVVIP KSVTPSRIEE
NFKVFDFSLD PQDMTEIAAL DSSSTRIGPD PMTASF
|
|---|
| |