Gene Avi_4210 details

Gene Information

• Locus tag: Avi_4210
• Symbol: rplS
• ID: 7386972
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3543459
• End bp: 3544001
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652890
• Product: 50S ribosomal protein L19
• Protein accession: YP_002551063
• Protein GI: 222150106
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0335] Ribosomal protein L19
• TIGRFAM ID: [TIGR01024] ribosomal protein L19, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.425838
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACATCA TTCAGCAGCT GGAAGCCGAA CAGGCCGCCA CGATCGAAGC CAAGCGCACC 
CTGCCGGAAT TTTCTCCTGG CGATACGCTG CGCGTCAACG TCCGCGTCAC GGAAGGCAAC 
CGTACCCGCG TACAGGCCTA TGAAGGCGTT TGCATTGCCC GCTCCGGCGG CAGCATCAAC 
GAAAGCTTCA CCGTTCGCAA GATTTCCTAC GGCGAAGGCG TCGAGCGCGT TTTCCCGGTC 
TATTCGCCGC TGGTCGAAAG CGTCGAAGTG GTCCGTCGCG GTAAGGTCCG TCGCGCCAAG 
CTTTACTACC TGCGCGACCG TCGCGGCAAA TCCGCTCGTA TCGTTGAAAA CACCGGCACC 
CGCGCCCGCA AGCTGAACGA CTCCGAGCGT GCAGCACTTG CCGAGGAAAA GGCACGCCTG 
GAAGCCGAAA AAGTTGCAGC AGCACAGGCT CTCGCCGCTG AAAAGGCCGC AGCAGAAGCC 
GCTGAAAAGG CTGCCGCCGC TGAAGCCGAA GCTGCAAAGG CTGCCGAAGG TTCGGCTGAA 
TAA 

 

Protein sequence

MNIIQQLEAE QAATIEAKRT LPEFSPGDTL RVNVRVTEGN RTRVQAYEGV CIARSGGSIN 
ESFTVRKISY GEGVERVFPV YSPLVESVEV VRRGKVRRAK LYYLRDRRGK SARIVENTGT 
RARKLNDSER AALAEEKARL EAEKVAAAQA LAAEKAAAEA AEKAAAAEAE AAKAAEGSAE