| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4114 |
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| Symbol | xerC |
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| ID | 7388908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3470135 |
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| End bp | 3471103 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652816 |
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| Product | site-specific tyrosine recombinase XerC |
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| Protein accession | YP_002550989 |
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| Protein GI | 222150032 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | CTGTATAAGA CGATCAATCA CGAAGGCCCT GCCGTGACAG AATTGCTGTT GATTGCCGCC
CCCGACCTGA TGGCGGAACG CCAGAATTGG CTTGCGAGCC TGTCTGGACA AAGGCGGCTC
GCTGATCATA CGTTGACCGC CTATGAACGC GATACCCGTC AGTTTCTCGG ATTTCTGACC
GGTTATTTCG GCGGTCCTCC GTCAATCGAT GATATCAAGG CGTTACGACC TTCCGACCTG
CGCGCATTTT TGTCGTCGCG CCGCAAGGAA GGTGCTGGCG CGCGCTCGCT CGGGCGCCAT
CTCGCCGGTG TCCGGTCGCT CTTGCGCTAT CTGGAGCGCA AGGGCCTGGT CAATGCTGCC
GGTGCCGGTG CCATCCGCTC ACCCAAGCAG CCGAAATCGC TGCCGAAGCC GCTCAGTGCC
GCCCAGGCTT TGACGGTGGT GGCCGCGGAA ACACAATTGA ACGAGGAGCC TTGGATCGCG
GCGCGGGACG CTGCGGTTTT TGCTTTGCTC TATGGCTGCG GCCTGCGCAT TTCCGAGGCG
CTGGACCTGA CACCCGCCGA TATCGTCGCC ACGACGACAA CACTACGGGT GACCGGCAAG
GGCAACAAGA CCCGGCTCGT GCCGCTCTTG CCCATTGTGC GGCAAGCGGT TGAATCCTAT
CAAAGCCTCT GCCCCTATCA CCTCCCAGCC ACAGAGCCGC TGTTTCGCGG GGCGCGCGGC
GGGAAATTGC AGCAAGGCAT CATCCAGCGG GAAATGCAGC GCTTGCGCTC GGCACTCGGC
CTGCCGGATA CCGCAACGCC ACATGCATTG CGCCATTCCT TTGCCACGCA TCTGCTGAGC
GGCGGCGGCG ACCTGCGCAC CATTCAGGAA TTGCTTGGCC ATGCCAGCCT CTCCACCACC
CAGATCTATA CCGGCGTGGA TTCGGCACGG CTGTTGGATG TGTATGACCG GGCGCATCCC
CGCGCGTGA
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| Protein sequence | MYKTINHEGP AVTELLLIAA PDLMAERQNW LASLSGQRRL ADHTLTAYER DTRQFLGFLT
GYFGGPPSID DIKALRPSDL RAFLSSRRKE GAGARSLGRH LAGVRSLLRY LERKGLVNAA
GAGAIRSPKQ PKSLPKPLSA AQALTVVAAE TQLNEEPWIA ARDAAVFALL YGCGLRISEA
LDLTPADIVA TTTTLRVTGK GNKTRLVPLL PIVRQAVESY QSLCPYHLPA TEPLFRGARG
GKLQQGIIQR EMQRLRSALG LPDTATPHAL RHSFATHLLS GGGDLRTIQE LLGHASLSTT
QIYTGVDSAR LLDVYDRAHP RA
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