| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3928 |
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| Symbol | |
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| ID | 7387285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3295133 |
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| End bp | 3296317 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652669 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002550850 |
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| Protein GI | 222149893 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACA CACACGCTGG CCCCTCCATT GGTGGCGCAA TACCGCATTA CGTCTCGCCT
TTGCCGTTCG ATCCCTATGC GGCGGAGGAC GAGGTCACAT CCCGGCGCTC ACCGGTCGAC
CAGGCCTCGC AATTTCGCCT GACCTGGTGG CGGTTCAAGC GGCATAAACT GGCCTATTAT
TCTGGCATGC TGCTGCTGGC GGCCTATCTG ATGATTGTCG TCATCGAGTT TCTAGCGCCT
TATAATGTCC ATACCCGCAA TGTGGACCGG ATCTACGCGC CGCCGCAAGC CGTGCATCTG
TTCGATGAAA ACGGGTTTGT TGGGCCTTTC GTCTATGGCC GGACGATGTC GCTGGATATG
GACACATTGA AACGGGTCTA TACCGACGAT CCGCAACAGG TGCAGAAGCT GCGGTTTTTC
TGCCGGGGCG ATAGCTATCG TTTCTGGGGG TTGGTGGACA GCGATCTGCA TCTGGTCTGT
CCGGCGGAAG GTGGCAATTT CTTCCTGCTC GGCACCGACC GGCTGGGCCG GGACGTGCTG
TCTCGCATCC TCTACGGCGC CCGGATTTCG CTGACCATCG GTCTTCTGGG CGTGATGACC
AGTTTCGTGC TTGGCATCGT CATCGGCGGG CTGGCCGGCT ATTGGGGCGG CTGGTTCGAT
ATGGTCGTGC AGCGCATTAC CGAAGTCCTG CATTCCATTC CCAGCATTCC ACTGTGGCTG
GCGCTGGCGG CGATCATGCC GCCAGACTGG AGCCCGCTGC TGGTCTATCT CGGCATCACC
TTCATTCTCG GCCTCTTGGA CTGGACGGGG CTGGCGCGGG CGGTGCGCTC CAAGCTGCTG
GCGCTGCGCG AGGAAGATTA CGTGCTGGCC GCCCAGATGA TGGGATCGGG AAGCGCCCGT
ATCATCGGTC GTCATCTCAT TCCGGGCTTC ATGTCGCATC TGATTGCCAG CGCGACGCTG
ACCATTCCCG GCATGATCCT GGGCGAAACA ACCCTGAGTT TTCTAGGGCT TGGCCTTCGT
CCACCAATTA CCAGCTGGGG TGTGTTGCTG ACAGAGGCGC GCTCGGTCAA TGTGATCGCA
CTTTATCCTT GGCTGCTGTT CCCGGTTGTT CCCGTCATCG TGATCATTCT TGCCTTCAAT
TTTCTAGGGG ATGGTCTTAG GGATGCCGCA GATCCATATA AGTGA
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| Protein sequence | MSDTHAGPSI GGAIPHYVSP LPFDPYAAED EVTSRRSPVD QASQFRLTWW RFKRHKLAYY
SGMLLLAAYL MIVVIEFLAP YNVHTRNVDR IYAPPQAVHL FDENGFVGPF VYGRTMSLDM
DTLKRVYTDD PQQVQKLRFF CRGDSYRFWG LVDSDLHLVC PAEGGNFFLL GTDRLGRDVL
SRILYGARIS LTIGLLGVMT SFVLGIVIGG LAGYWGGWFD MVVQRITEVL HSIPSIPLWL
ALAAIMPPDW SPLLVYLGIT FILGLLDWTG LARAVRSKLL ALREEDYVLA AQMMGSGSAR
IIGRHLIPGF MSHLIASATL TIPGMILGET TLSFLGLGLR PPITSWGVLL TEARSVNVIA
LYPWLLFPVV PVIVIILAFN FLGDGLRDAA DPYK
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