| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3875 |
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| Symbol | |
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| ID | 7388556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3232495 |
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| End bp | 3234201 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652623 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002550804 |
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| Protein GI | 222149847 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAACA TCCGGTTGAT TCTGGCGGCA TCCGTCGCGT CATTGATGAT GACGGGCGCG
CCAGCCATGG CCCAGCGCGG CAGTGACGGC GATCTGAAGA TGCTTTTCTG GCAGGCCGTG
TCCACCATGA ACATCTATCT GTCCGGCGGC ACCAAGGAGC AATATGCATC CTCCATCGTC
ATTGAGCCGC TGGCCGGCTT CGACGAAAAA GGCGAACTGG TTCCCAAGCT GGTTGACAGC
ATCCCAACTG TAGAAAACGG CGGCGTCTCC AAGGATCTGA CCAGCATCAC CTGGAAATTG
TCGAACGGCA TCAAATGGTC GGATGGCACG CCGGTTACCG CCGATGACGT GATCTTCACC
TGGCAATATT GCACGGCAGA TGGCGGCGGC TGCGCCCAGA AGCAGAAATA TGACGGCGTA
AAGACTGTCG AAGCGCTCGA TCCGCAGACC ATCAAGGTGA CGTTCACCTC GCCAAAGCCC
TATCCCTATT CGGCTTTTGT CGGCTCGCAG GCGCCGATCA TCCAGAAGGC CCAGTTCAAG
GATTGCCTCG GCCCCAAGGC GCCGGAATGC ACGGCTGCCA ACTTTGCCCC TATCGGCACC
GGCCCCTTCA AGGTCAAGGA ATTCAAGCCG AACGACGTGA TCACCTTCAC GGCCAATGAA
AACTACCGCG ATCCGGCCAA GCCCGCCTTT GCAACCGCAA CGCTGAAAGG CGGCGGCGAT
GCGCTGTCAG CGGCCCGTGC CGTGATGGAA ACTGGCGAAT ACGACTATGC CTGGAACATG
CAGGTCGAGC CTGAAGTGCT GGCAACCATG GAAGCCGCCG GCAAAGGCAA GATCATCACC
GCTTTCGGCA GCCAGGTCGA GCGTATCAAC CTCAACTTCA CCAATGCCGA TCCGGCACTT
GGCGACAAAC GCTCCACCAA GGAAGGCGGC CCGCATCCGT CCCTGTCCGA CCCGGCTGTG
CGCAAGGCGC TCTCCATGGC CATCGACCGT GATGTGATTG TCGAAGCCGG TTATGGCCTT
GCCGGCAAGC CGACCTGCAA TATCGTCCCC GGCCCGGATA TCTATGTCTC CACCACCAAT
GACTGGTGCC TGAAGCAGGA TATCGACGGC GCCAACAAGC TGCTGGACGA TGCTGGCTGG
AAAAAGGGCT CTGACGGCAT CCGCGCCAAG AACGGCGTCA AGCTGAACTT CCTCTACCTG
ACCTCGACCA ATTCCGTCCG CCAGGGCACC CAGGCGCTGG TCAAGGATAT GTGGTCGCAG
ATCGGCGTTG GCGCTGAACT GCGCAACGTT TCGGCCTCGG TATTCTTCGG CGGCGATCCG
TCCAGCCCGG ACACGTTCCA GAAATTCTAC GCCGACGTGG AAATGTACAC CAACAATTTC
GACGGCACCG ACCCGGAAGC CTATATGGCC GAATGGATGT GCGACAAGAT CCCAAGCCCG
GCAAACGGCT GGCAGGGCCA GAACATGCCG CGCTATTGCG ATCCAGCCTA TGATGCACTC
GTCACCAAGC TTTCCCAGAC CGCCAAGATC GAAGAGCGCG TCGAGATCGT CAAGAAGCTC
AACGACATGC TGACGGAAGC TGGCGCGCAT CTGCCGCTCG TCTATCGCGG TCAGCCTTCG
GCCTTCGCCG CAAGTCTCCA GGGCATCAAG ATGACCGGCT GGGACAGCGA GTTGTGGAAC
ATCGCCGACT GGTCGCGCGC CAAGTAA
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| Protein sequence | MRNIRLILAA SVASLMMTGA PAMAQRGSDG DLKMLFWQAV STMNIYLSGG TKEQYASSIV
IEPLAGFDEK GELVPKLVDS IPTVENGGVS KDLTSITWKL SNGIKWSDGT PVTADDVIFT
WQYCTADGGG CAQKQKYDGV KTVEALDPQT IKVTFTSPKP YPYSAFVGSQ APIIQKAQFK
DCLGPKAPEC TAANFAPIGT GPFKVKEFKP NDVITFTANE NYRDPAKPAF ATATLKGGGD
ALSAARAVME TGEYDYAWNM QVEPEVLATM EAAGKGKIIT AFGSQVERIN LNFTNADPAL
GDKRSTKEGG PHPSLSDPAV RKALSMAIDR DVIVEAGYGL AGKPTCNIVP GPDIYVSTTN
DWCLKQDIDG ANKLLDDAGW KKGSDGIRAK NGVKLNFLYL TSTNSVRQGT QALVKDMWSQ
IGVGAELRNV SASVFFGGDP SSPDTFQKFY ADVEMYTNNF DGTDPEAYMA EWMCDKIPSP
ANGWQGQNMP RYCDPAYDAL VTKLSQTAKI EERVEIVKKL NDMLTEAGAH LPLVYRGQPS
AFAASLQGIK MTGWDSELWN IADWSRAK
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