| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3811 |
|---|
| Symbol | |
|---|
| ID | 7388507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3169072 |
|---|
| End bp | 3170241 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643652574 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550755 |
|---|
| Protein GI | 222149798 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2215] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.397121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACGC CGACGCAATA TAGACGGGCT TCAAGCACCA CTCTTCTCGT AGCGGTCGCT
CTTGCCGCGA CACTCACCGC TACACTGGCC CATGCGGGTT CGCCGCTTGG CATCGGCACC
GCCGAACCGT CTTTTCAGAT GGACGGGCCG CTGGCGGGTG TGATGTTGTG GATCAACACC
CATCAACAAG CTTTCTACCG GTCGCTGACC GAGGCGCTGC GCGGCATGCG TGACGATCCG
CACCAGCTCT GGGTCCTGAT CGGCTTGTCC TTCGCTTACG GGGTGTTTCA TGCCGCAGGC
CCCGGCCACG GCAAGGCGGT GATCTCGTCC TATATGGTTG CCAATGAGCT GGAGCTGAAG
CGCGGCATCG CCATTTCCAT CGCCTCGTCG ATTTTGCAGG CCATCGTCGC CATCGTCACG
GTGGGTGTGA TGTTTCTTGC CCTGCGCGGC AGCGGTATTA CGCTGACGCG GGCAACCGAT
GCCATGGAAG CCGCCAGTTT CGCGCTGGTG GTCGCCTTTG GCGTCTGGCT GCTGGTGCGC
AAGCTGGGCG AGATTTTCCG GCATCGCCAG CCTGTGCCGG TCCTTGCCTT TTCCGGCGGG
AGTGCTGGCG ACATATCATC TGGCAGCGTG ACATCCGGCT TGTTCGATGC GCCCCAGCCG
GGAGGGACAA AATCCGCCTC GTTCTCAGGT TCTGGATCTC TTAAAGGAAC CGGCCTACGG
TTCAAGGCCG ATGTAGCCGA GAGCGACCGT CATGTGCCGC GTGAGGGCGA AATCTGCGTG
GATTGCGGCC GCAGCCATCT TCCGTCACCC GCCATGGTCG GTGCCGAGCA TTTCAGCGTC
AAGGAAGCCT GGTCGGCCAT TGTCGCCGTT GGCCTTCGCC CCTGTTCAGG CGCGCTGCTG
GTCATGACCT TCGCCATGCT GAACCAGCTC TATCTCGGCG GCATTCTATC GGTCTTCGCC
ATGGCGGCGG GAACCGCGAT CACCGTTTCG GCACTTGCCA TCGCTGCCGT CGGTGCCAAG
GGCCTGGCGG TGCGGCTGGC GGGCCATGGC TCCCATACCG CCTACCGCGT CGGCCTTGCC
ATCGAAATTG GCGGCGCGTT GTTCATCATC CTGGTCGGAA GCCTGCTGTT GGCCGCCTCC
CTGCAAGGCT ATCACCTGTC ATCCGGGTGA
|
|---|
| Protein sequence | MLTPTQYRRA SSTTLLVAVA LAATLTATLA HAGSPLGIGT AEPSFQMDGP LAGVMLWINT
HQQAFYRSLT EALRGMRDDP HQLWVLIGLS FAYGVFHAAG PGHGKAVISS YMVANELELK
RGIAISIASS ILQAIVAIVT VGVMFLALRG SGITLTRATD AMEAASFALV VAFGVWLLVR
KLGEIFRHRQ PVPVLAFSGG SAGDISSGSV TSGLFDAPQP GGTKSASFSG SGSLKGTGLR
FKADVAESDR HVPREGEICV DCGRSHLPSP AMVGAEHFSV KEAWSAIVAV GLRPCSGALL
VMTFAMLNQL YLGGILSVFA MAAGTAITVS ALAIAAVGAK GLAVRLAGHG SHTAYRVGLA
IEIGGALFII LVGSLLLAAS LQGYHLSSG
|
|---|
| |