Gene Avi_3809 details

Gene Information

• Locus tag: Avi_3809
• ID: 7388506
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3168419
• End bp: 3169078
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643652573
• Product: hypothetical protein
• Protein accession: YP_002550754
• Protein GI: 222149797
• COG category: [R] General function prediction only
• COG ID: [COG3683] ABC-type uncharacterized transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACATAG CAAGACCTCT TCTTCTCGCC GGTTTTCTTG TTGCAGGCTT TGTGAGCCTG 
TCGGTGCCCG CGGCTTTTGC CCATCCGCAT GTCTTCGTCC AGGCCCGGCT GGAAGTGGTG 
GCGGGAGCGG ACAATACCAT CAAGGAATTG CGCAATACCT GGCGCTTCGA CGAGGTGTTT 
TCCTCCAGCG TCATGCTGGA TTTCGACAAG AACGGCGACC TGAAGCTCGA CCATAGCGAG 
TTGCAGGATA TCGCCAATAC GATCAGAAGC TCGCTTGGCG ACTATGGTTA TTTCACCTTC 
ATCAGTGCCA GCGGCGCAAC CGTCAACGTC GCCAAGCCGC AGGTGTTCAA CGCCGATTAT 
AAAGACAATC AATTGCTGGT GTTCTTTATC GTCAAGCCGG AAAAGCCCAT TCCGATCAAG 
GGCAATCTCA GCTTCGGCGT TCACGATCCG ACCCTTTATA CCGCCATCGA CTTCAAGCAG 
GACAGCGACA TCGTTGAGAC CGGCGACGCG CTGAAGAAAT GCAAGCGCAC CGTGGTCCGG 
CCCAATCCCG ATGATGTGAT CAAGCAGAAC CAGGCCAGTC TGACCGAAGC CTTTTTCAAC 
GATCCGACCG GCACGGACAT GGGCAAGCTG TTTGCAACGA GGCTCGACCT GGCATGTTGA 

 

Protein sequence

MNIARPLLLA GFLVAGFVSL SVPAAFAHPH VFVQARLEVV AGADNTIKEL RNTWRFDEVF 
SSSVMLDFDK NGDLKLDHSE LQDIANTIRS SLGDYGYFTF ISASGATVNV AKPQVFNADY 
KDNQLLVFFI VKPEKPIPIK GNLSFGVHDP TLYTAIDFKQ DSDIVETGDA LKKCKRTVVR 
PNPDDVIKQN QASLTEAFFN DPTGTDMGKL FATRLDLAC