| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3777 |
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| Symbol | soxA |
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| ID | 7388231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3142233 |
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| End bp | 3145226 |
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| Gene Length | 2994 bp |
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| Protein Length | 997 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652547 |
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| Product | sarcosine oxidase alpha subunit |
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| Protein accession | YP_002550728 |
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| Protein GI | 222149771 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.152645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGTG CCAATCGTAT TCCCGGCAAG GGCCGTCTGA CGCCCGCCAG AACCGCGCGT
TTCACCGTGG ATGGCCGCAT TCTCACCGCC ATTGAGGGTG ATAGCGTGGC ATCAGCCCTG
CTGGCCAATG GCATTCATCT GGTCGGTCGC TCGTTCAAAT ATCACCGTCC ACGCGGCATT
CTCACCGCTG GCCCGGAAGA GCCAAACGCG CTGCTGAACA TTTCGCGCGA CAGTGCGCGG
CGTCAGCCAA ACGTGCGTGC GCCCGTGCAG GAAGTGTTTG ATGGCATGCG CGTGCAGACG
CAAAACCGCT GGCCGTCGCT GTCGATGGAT ATTGGCGCGG TCAACGACCT GCTCTCGCCC
TTCTTTGCCG CAGGCTTCTA CTACAAGACC TTCATGTGGC CGAAGAGCTT CTGGCATAAG
ATTTATGAGC CGATCATTCG CCGCGCCGCA GGCCTTGGCG TGGCCCCAAC CGAAGACGAC
ACCGACCATT ACGCCAACCG CTACGCCCAT TGCGACGTGA TGGTGGTGGG CGGCGGCCTG
GCTGGTCTGA CAGCTGCGCT TGCTGCGGCA GAAACTGGCG CTTCCGTGAT TATCTGCGAT
GAACAGCCCG AAATGGGCGG TGCCTTCCAT TATGATACGG GAGCCGTGAT TGACGGCCAA
AACGGCTATG ACTGGGCGCA AGCCACCGTG GCCAAGCTAA AAGCCATGGA CAATGTGACC
GTGCTGACCC GCACCACGGC ATTTGGCTAT TACAATCACA ATTTCCTCGG TCTTGCCGAG
CGCGTCACCG ACCATATCGC CAAACCCGCC AAGGGCTTGC CGCGCGAACG GCTGTGGCAG
GTACGGGCGA AAAAGGTGGT GCTGGCCACG GGCTCCATTG AGCGCCACAT GGTGTTTGCC
AACAACGACC GCCCCGGCAT TATGCTGGCA TCGGCGGCTC GCACCTATCT CAACCATTTT
GGCGTGGCCG TGGGCGCAAA AGTGGCAGTC TACACCGCCC ATGATTCGGC CTATGAAGCG
GCGATTGACC TGAAAAAAGC GGGCGTGCAG GTGGTGGCCA TCATCGACTG CCGCCGCAAT
TCGGGAGCAA GCGTCTTGGC TGACGCCAAG GCGGCAGGCA TTGAGGTTTT GAGCGAACAT
TGCGTTCTCG ATACCGCTGG GCGCCTACGG CTAAAGTCCA TCACTATTGC CAGCAAGGGC
GGTTTTGATC GCCGCAAGCT GGCCGTCGAT GCGCTGCTGA TGAGCGGCGG CTGGACGCCT
TCGGTGCATC TGTTCTCGCA GTCACGCGGC AAGCTGCGTT TCGACGCCGC CAACCAGCGC
TTCCTACCAG ACATTTACGT GCAAGATAGT ATCTGCGTTG GAGCCTGCAA CGGCACGGAT
GATCTCAGCG AACTGCTGAC TGAGGCCTAT GCCAGCGGCG CAAGGCTGGC AAAAGAAGCC
GGCGCAGAAG GCGAAAGCGG CAGCGCACCA AGCGGTGCCA ACGCCTTTGC TTGGACCGGC
GGCATGATTG GCGCTGCCGA AGGCGCTGGC CCGGATGATG CAGTCAAAGC CTTTATCGAC
TTCCAGCACG ATGTCTGCGC CAAGGATATT CGCTTGGCGG TGCGCGAGGG CATGCATTCC
ATCGAGCATA TCAAACGCTT TACCACCAAT GGCATGGCGT CTGATCAGGG CAAGCTGTCC
AATATGCACG GGCTGGCAAT TGCCGCCGAA ATGCTGGGAA AAGAAATCCC GCAAGTGGGC
CTCACCACCT TCCGCGCCCC CTATACGCCC GTAACATTCG GCACGCTGAT CAACCATTCG
CGTGGCGAAT TGTTTGACCC AACCCGCAAA ACTCCGATGC ATGATCTGGA AACGGCGCTG
GGTGCCGATT TTGAAGATGT CGGCAACTGG AAACGCGCCT GGTATTACCC CAAGCCCGGC
GAGGATATGC ACGCCGCCGT CAACCGCGAG TGCAAAACCG TGCGCGAGGT TGCGGGCGTC
TTCAATGCCT CAACGCTGGG CAAAATCGAG GTGGTTGGCC CGGATGCGGC CAAATTCCTC
AACCTGATCT ACACCAACCC GTGGGATAGC CTCAAACCCG GCAAATGCCG CTATGGCATC
ATGACCCGCG ACGACGGGTT TATCTATGAC GACGGCGTGG TTGGACGGCT GGCCGAAGAC
CGCTTCCACG TCACCACCAC CACTGGCGGT GCCGCCCGTG TGCTGAACCA TATGGAAGAT
TATCTGCAAA CGGAATTCCC GGAGCTAAAC GTCTGGCTCA CCTCCGCTTC CGAGCAATGG
GCGGTGATTG CCGTGCAGGG ACCAAAGGCT AGAGAGATTA TCGAACCCTT CGTGGAAGGC
ATTGATATTT CCAACGAGGC CTTCCCGCAT ATGAGCGTGG CGGAAGGGAA ATTCTGCGGC
GTGCCAACCC GGCTGTTCCG CGTATCATTT ACAGGCGAAG TGGGCTTTGA AATCAACGTG
CCCTCGGATT ACGGCGCATC CGTATTCGAA GCCGTGTGGA AGCGTGCGGA AACCATGGGC
GCCTGCCTCT ATGGCACCGA AACCATGCAC GTGTTGCGCG CCGAAAAGGG CTATATCATC
GTTGGCCAAG ACACCGATGG CACGCTGACG CCCGATGATG CCAATTACGG CTGGGCAGTG
TCGAAGAAAA AGACCGATTT CGTTGGTATT CGCGGCCTCA AACGCCCGGA TCTGGTCCAG
GAAGGCCGCA AGCAACTGGT CGGCCTCAAG ACCAAAGACC CCATTGAGGT GCTGGAAGAA
GGCGCACAGA TTGTTGCCAA CCCCAACCAG CCCAAGCCGA TGACCATGCT GGGCCATGTC
ACCTCGTCCT ACTGGTCGGA AAATCTTGGC CAATCAATTG CCATTGCCAC GGTGGCCGGT
GGCCGGGCGC GGATGGGCGA AACGCTCTAT GTGCCGATGC CTGACAAGAC AATCGCCGTG
GAAGTGACCG ACATGGTCTT TTACGACAAG GAAGGAAGCC GCATCCATGG TTGA
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| Protein sequence | MSGANRIPGK GRLTPARTAR FTVDGRILTA IEGDSVASAL LANGIHLVGR SFKYHRPRGI
LTAGPEEPNA LLNISRDSAR RQPNVRAPVQ EVFDGMRVQT QNRWPSLSMD IGAVNDLLSP
FFAAGFYYKT FMWPKSFWHK IYEPIIRRAA GLGVAPTEDD TDHYANRYAH CDVMVVGGGL
AGLTAALAAA ETGASVIICD EQPEMGGAFH YDTGAVIDGQ NGYDWAQATV AKLKAMDNVT
VLTRTTAFGY YNHNFLGLAE RVTDHIAKPA KGLPRERLWQ VRAKKVVLAT GSIERHMVFA
NNDRPGIMLA SAARTYLNHF GVAVGAKVAV YTAHDSAYEA AIDLKKAGVQ VVAIIDCRRN
SGASVLADAK AAGIEVLSEH CVLDTAGRLR LKSITIASKG GFDRRKLAVD ALLMSGGWTP
SVHLFSQSRG KLRFDAANQR FLPDIYVQDS ICVGACNGTD DLSELLTEAY ASGARLAKEA
GAEGESGSAP SGANAFAWTG GMIGAAEGAG PDDAVKAFID FQHDVCAKDI RLAVREGMHS
IEHIKRFTTN GMASDQGKLS NMHGLAIAAE MLGKEIPQVG LTTFRAPYTP VTFGTLINHS
RGELFDPTRK TPMHDLETAL GADFEDVGNW KRAWYYPKPG EDMHAAVNRE CKTVREVAGV
FNASTLGKIE VVGPDAAKFL NLIYTNPWDS LKPGKCRYGI MTRDDGFIYD DGVVGRLAED
RFHVTTTTGG AARVLNHMED YLQTEFPELN VWLTSASEQW AVIAVQGPKA REIIEPFVEG
IDISNEAFPH MSVAEGKFCG VPTRLFRVSF TGEVGFEINV PSDYGASVFE AVWKRAETMG
ACLYGTETMH VLRAEKGYII VGQDTDGTLT PDDANYGWAV SKKKTDFVGI RGLKRPDLVQ
EGRKQLVGLK TKDPIEVLEE GAQIVANPNQ PKPMTMLGHV TSSYWSENLG QSIAIATVAG
GRARMGETLY VPMPDKTIAV EVTDMVFYDK EGSRIHG
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