Gene Avi_3764 details

Gene Information

• Locus tag: Avi_3764
• Symbol: glgX
• ID: 7388221
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3131586
• End bp: 3133535
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643652537
• Product: glycogen debranching enzyme GlgX
• Protein accession: YP_002550718
• Protein GI: 222149761
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases
• TIGRFAM ID: [TIGR02100] glycogen debranching enzyme GlgX

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGGTG CTGGCGCTCG TCTCACGGCA AAAGGCGCGG AGTTTGCGGT CTATTCCCGT 
GATGCCGAGC ATCTGGACCT GTGCCTGTTT GATGAGGCCG GAGACACCGA GCTTCGCCGC 
CTGCCAATGC AGCGCGGCGA AGACGATCTG CACCGGCTGA CCGTCGAAGG ACTGGTCGTT 
GGAGCGCGAT ACGGCTACCG CGCCCATGGG CCGTATGATC CCGACCAAGG CCTGTGGTTT 
GATCCAGCAA AACTGCTGGT CGATCCCTAT GCGCTGGAAA TCGACCGTCC CTTCCGTCAC 
GATCCGCGCC TCAGCCAATT TGGCGAGGAC ACCGCCGATC TGGCGCCTAA GGCCATCCTG 
ACCGTGCCCG GGCAGGCCGT GCTGGAGCCG CCCCGCCTGC CAGATGGCGG CTTTATCTAT 
GAATTGCCGG TGCGCGGCTT CACCATGCTG CATCCTGATG TGCCTGAAAA CCTGCGCGGC 
ACGGTGGCGG CCCTCGCCCA TCCTTCCATC ATCGCCCATC TGCAAGCCAT TGGCGTCGAT 
GCGGTGGAGC TTTTACCGAT CATTGCCTGG ATCGATGAAC GGCACCTGCC GCCGCTCGGC 
CTTTCCAACA GCTGGGGCTA TAACCCTGTC GCCCTGATGG CGCTCGACCC GCGCCTCTGC 
CCCGGCGGGG TGGAAGAATT GCGCCGCACC GTCGAATGCC TGCATGAGAA TGGCATCGGC 
GTCATCCTCG ATCTGGTCTT CAACCATTCC GGTGAAAGCG ACCGGTTCGG CGCAACGCTG 
TCGATGCGCG GCCTCGACAA CAGGAGCTAT TACCGGCACC TGCCCGACCA GCCGGGCGTG 
CTGGTCAACG ATACCGGCTG CGGCAATACC ATTGCCTGCG ACAGACCGGT GGTGCGCCAG 
CTGATCCTCG ACACACTCAG CCATTTCGTC CTGGCGGCGG GCGTCGATGG CTTTCGTTTC 
GATCTCGCCC CGGTCCTGGG CCGGACCGCG ACGGGCTTTG AGGCGCAAGG CGAGATGCTG 
ACGGCCATGC TCCAGGACCC GATTTTGAAG GACCGGGTGA TGATTGCCGA GCCCTGGGAC 
ATTGGTCCGG GCGGCTATCA GCTCGGCAAT TTCCCGGCAC CGTTTCTGGA ATGGAACGAC 
CGCGCCCGCG ACACGATGCG CCGCTTCTGG CGCGGCGATG ATGGGCTGAC CGGGGAGATG 
GCCACGGTGC TGGCGGGTTC ATCGGATATT TTCTCGCGCA ACGGCAGCCC TCACACCCGC 
AGCGTCAATT TCATCGCCAC CCATGACGGT TTCACGCTGC ACGATCTGGT GTCCTATGCC 
CATAAGCACA ATGAGGCGAA TGGCGAGGAT AACAGAGACG GCCATAATGA CAATCACAGC 
TGGAACAATG GCGCTGAGGG CGAAACCAGC GACCCTGATA TCCTGACCGC CCGCAAGCGT 
GATTGTACCG CTCTGCTCTC CACCCTGTTT GCCTCGAAAG GCTGGGTGAT GCTGACGGCT 
GGCGATGAAG GCGGTCGCAG CCAGCGCGGC AATAACAATG CCTATTGCCA GGACAATGCC 
ATCACCTGGC TGGACTGGGC AGCGCTCGAT GCCGATCTGC TCGCCCACAC CGGACGGTTG 
GCCGCCCTTC GCCGGCGGTT TCCGTCCCTC ACAGATCCGG CCTTTTTCAC CGGCAATGGC 
GATGTCAGCT GGATTGATGC CTCTGGCCTG CCGATGAGCG TCGAGACCTG GCAAAATTCA 
CAGGCCCGCT TCTTTGGCCT ACTGTTAGCC ACACCGGATC GCACCACAGG GCGCGACACG 
CGGTTGGCAA TCCTGATCAA CAGGGGTGAA GCCTGTGGCG TCAATCTACC CGCCTCAACG 
GCAGGGGGAT GGCGGGAGGT TTTTTCGGAT GCAGTTGCTT CAAAACTGGT GATGGAACCA 
CGCCATGTGG CATTTCTCGT CGAAGGTTGA 

 

Protein sequence

MTGAGARLTA KGAEFAVYSR DAEHLDLCLF DEAGDTELRR LPMQRGEDDL HRLTVEGLVV 
GARYGYRAHG PYDPDQGLWF DPAKLLVDPY ALEIDRPFRH DPRLSQFGED TADLAPKAIL 
TVPGQAVLEP PRLPDGGFIY ELPVRGFTML HPDVPENLRG TVAALAHPSI IAHLQAIGVD 
AVELLPIIAW IDERHLPPLG LSNSWGYNPV ALMALDPRLC PGGVEELRRT VECLHENGIG 
VILDLVFNHS GESDRFGATL SMRGLDNRSY YRHLPDQPGV LVNDTGCGNT IACDRPVVRQ 
LILDTLSHFV LAAGVDGFRF DLAPVLGRTA TGFEAQGEML TAMLQDPILK DRVMIAEPWD 
IGPGGYQLGN FPAPFLEWND RARDTMRRFW RGDDGLTGEM ATVLAGSSDI FSRNGSPHTR 
SVNFIATHDG FTLHDLVSYA HKHNEANGED NRDGHNDNHS WNNGAEGETS DPDILTARKR 
DCTALLSTLF ASKGWVMLTA GDEGGRSQRG NNNAYCQDNA ITWLDWAALD ADLLAHTGRL 
AALRRRFPSL TDPAFFTGNG DVSWIDASGL PMSVETWQNS QARFFGLLLA TPDRTTGRDT 
RLAILINRGE ACGVNLPAST AGGWREVFSD AVASKLVMEP RHVAFLVEG