| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3548 |
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| Symbol | |
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| ID | 7388813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2943293 |
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| End bp | 2944249 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652381 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002550564 |
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| Protein GI | 222149607 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.280114 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCACT CCCGTAAGCT GCTTTATATC GACGAGATTG CCCGTTGCGG TTCAATTCGT
AAAGCCGCCG CTAGACTTAA CGTTGCATCT TCCGCTGTCA ACCGGCAGAT TTTGGCACTG
GAAGATGAGC TTGGCGTTCC GCTTTTTGAG CGTCTGCCGC GTGGGCTTCG GCTGACGGCG
GCGGGGGAGC TGTGCGTCGA GCATATCCGC GACGTTCTGA AGGGCTATGA ACGTCTGGAA
ACGCGGATCC GCAGCCTGAA AATGCCACAG GTGGGCAAGG TGTCGCTGGT CGCCACGGTG
GGGCTGGCGG CCGGGCCTCT ACCGGAAATC ATTGCCCGGT TTCTGGACGC GCATCCGCGC
ATCAAGGTGC ATTTGCGCAA TGACAGCGGC TCCACCACCC TCAATCCGGT GCTAACGGGC
GAAGTGGATA TCGGGCTGGG CTTCAACATC CCGGCAACGC CAGGTATTCG CACCATCGCC
AATTTCGATA TCCCTGTCGG CGCGGTTTTA CCGCCCGGTC ATCGGCTGGC GCGTGAAAAA
GGCCCGATCG ATCTGGTCGA TGTGGTGCAG GAAAAACTGG TGCTGGCCGA GCCTGGCACC
AGCCTGCGCA ATGTCATCAA TCTGGCGCTT GCCAATCTGC CGCTGCCGGT CGAGCCGCTG
CTGGAAACCA ATGCCTCTGA ATTGTTGAAG CAATTGGTCA AATGCGGCAC GGCGCTGACC
CTGCTCAATC CGCTGGATGT GATTGTCGAA TGCCGCAAGG GCGAACTGGT GTTTCGACCG
CTGGCCGAAC CGCATTGCCG CCATCAGCCG ATGAAACTGT TTGCCCGGGC GCGGGCGCCG
CTCGATGCAG CGACCAGCCT GTTCGTCGAA TATCTTGTTC AGGAAATCCA GGCCCTGGTG
GTGGAATTGC AGGGCAGGGG ATATCTTGCC GCGGACCGTT CTTATTCCGG GGAATAA
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| Protein sequence | MLHSRKLLYI DEIARCGSIR KAAARLNVAS SAVNRQILAL EDELGVPLFE RLPRGLRLTA
AGELCVEHIR DVLKGYERLE TRIRSLKMPQ VGKVSLVATV GLAAGPLPEI IARFLDAHPR
IKVHLRNDSG STTLNPVLTG EVDIGLGFNI PATPGIRTIA NFDIPVGAVL PPGHRLAREK
GPIDLVDVVQ EKLVLAEPGT SLRNVINLAL ANLPLPVEPL LETNASELLK QLVKCGTALT
LLNPLDVIVE CRKGELVFRP LAEPHCRHQP MKLFARARAP LDAATSLFVE YLVQEIQALV
VELQGRGYLA ADRSYSGE
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