| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3488 |
|---|
| Symbol | |
|---|
| ID | 7388761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2885633 |
|---|
| End bp | 2886976 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643652329 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550512 |
|---|
| Protein GI | 222149555 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCG ATGAACTGAC TGGCCTGCGG CGGCCGGGTT TTTTCGCGCG AACATCTGCC
CAGACTTTAT TGTGCCTGTT CACACTCGGC GTTTCCATGA TGGTGCCGGG TGGCCTTGCT
TACGCGGCGG GCGGCTGCGG CGTGACCGTC CGGGCCGGGT TACAGGACCT GACATTCACG
TCCGGTGGCA TTGAGCGTAC GGCGGTCGCC TACATTCCCC AAGGCTATAC CGGCAAGGCC
AAGGTGCCTG TGGTGTTCGA TCTGCACGGG TCCAACAGCT TTCCCCGCGA TCAGCTGGGT
CGTAGCCAAT GGTCCGACGT GGCGCGGGAA AACGGCTTCA TCGTCATTGC CCCACAGGGC
GGGCTGAATG GCAAGGCGGA AGGCACCCAT GCCTGGAACG TGCCGGGTGT GGTCCCCGTA
CCCGGCGTGA CCGTGCCAAA TGCCACAGTT TCGCCAAATG CCACAGTTTC GAATGGGACC
GTAACCAACG CGAGCGTGAC AAGCTCGACC GCGCCCAGTA CATCTGTCTC TACAGTAACC
GAAGCCAAAG GGCCGGATGA TGCCGCTTAT CTCAGCGACA CAGTGGCGCT GGTCAAGGCC
AAGTTCTGTG TCGATCCCGA CCGTATCTAT GCGTCCGGCT ATTCGGGTGG CGGGCGGATG
CTGTCGCAAT ATATCTGCAA CGGCAATACG GATTTCTCCG CTGCCGGTTT CGTCATGAGC
CTGCGGGCCG GGACGCCGCG CCAGGGCGTT GGCCCCGATC AGGGAAAATG GCTGCCCGAT
CCGCAAAGCT GCCGTCCGGG CCGTCCGGTG TCGATCATCG CCTTCTGGGG GCTGAAGGAC
AATACCAATC CTTACGCGGG CGGTGGTAGG CCCTATTGGC AATATGGCGG CGAAGCGGCA
CTCAATCGCT GGGCCGAGCT GGATGGCTGC CAGGGCGAAC GCAAGATCGT CAAGGGGACG
AAAATTTCCT CGGCGGAATT CGAGCGCTGC AAGGGCGGTG CCCGCATCCT GTCCTATACG
ATTGCCGACC AGACGCATGA CTGGCCCGCG CAGACTATCG GCTTCTCACT GGCTGCCGCC
AATTCCAAGG CAAAGGCCGT TGATGGCAAG AGCGTCGATG GCAAGAGCCA GGAAGACATG
TATGCCGCCA AACGGATGTG GGCTTTCTTC GACAGTGGCG ATGGTCGCCT GATCGCCAAC
AATATCGCCA AAAACGCCTG TGCCGATGGC GCAAAACCGG CTGCTGGCGC AACGGCCTCT
GTAAACCCTG CCTGCTCGGT GACGATGAAG GCCAAGGTCA AGCCGCAGGC GGTGGAAAGC
CCGATGTCGG CGGACGCGCT GTAG
|
|---|
| Protein sequence | MTFDELTGLR RPGFFARTSA QTLLCLFTLG VSMMVPGGLA YAAGGCGVTV RAGLQDLTFT
SGGIERTAVA YIPQGYTGKA KVPVVFDLHG SNSFPRDQLG RSQWSDVARE NGFIVIAPQG
GLNGKAEGTH AWNVPGVVPV PGVTVPNATV SPNATVSNGT VTNASVTSST APSTSVSTVT
EAKGPDDAAY LSDTVALVKA KFCVDPDRIY ASGYSGGGRM LSQYICNGNT DFSAAGFVMS
LRAGTPRQGV GPDQGKWLPD PQSCRPGRPV SIIAFWGLKD NTNPYAGGGR PYWQYGGEAA
LNRWAELDGC QGERKIVKGT KISSAEFERC KGGARILSYT IADQTHDWPA QTIGFSLAAA
NSKAKAVDGK SVDGKSQEDM YAAKRMWAFF DSGDGRLIAN NIAKNACADG AKPAAGATAS
VNPACSVTMK AKVKPQAVES PMSADAL
|
|---|
| |