| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3449 |
|---|
| Symbol | |
|---|
| ID | 7387053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2851682 |
|---|
| End bp | 2852995 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643652299 |
|---|
| Product | dihydropyrimidine dehydrogenase |
|---|
| Protein accession | YP_002550482 |
|---|
| Protein GI | 222149525 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.591903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA TCAGAAATAA TTTCGTCGGC ATCAAATCAC CCAACCCCTT CTGGCTGGCC
TCTGCGCCAC CGACCGACAA GGCCTATAAT GTCGAGCGCG CCTTCAAGGC GGGCTGGGGC
GGCGTGGTGT GGAAAACCCT CGGCTCGGAA GGCCCGCCGG TCGTCAATGT CAATGGTCCG
CGCTACGGGG CCATCTGGGG GGCGGACCGC CGCCTGCTGG GTCTCAACAA TATCGAGCTG
ATCACCGACC GGCCCTTGCA GGTCAATCTT CAGGAAATGA AGATGGTCAA GATGAACTGG
CCGGACCGCG CCCTGATCGC CTCAATCATG GTGCCCTGCG AGGAGGAAGA GTGGAGGGCG
ATCCTGCCGC TGGTTGAAGA AACCGGGGCT GACGGCATTG AGCTGAATTT CGGCTGTCCG
CACGGCATGT CGGAACGCGG CATGGGGGCC GCCGTCGGTC AGGTGCCAGA ATATATCGAA
ATGGTTGTGC GCTGGTGCAA GCAATATAGC CGCATGCCCG TCATTACCAA GCTGACGCCG
AACATTACCG ATATCCGCAA ACCGGCCCGC GCGGCCAAGG CTGGCGGCAC CGATGCAGTT
TCGCTGATCA ACACCATCAA TTCCATCGTC TCCGTCGATC TCGACAGCTT TGCCCCCAAC
CCCAGCGTTG GCGGCAAGGG CAGCCATGGC GGTTATTGCG GCCCGGCGGT CAAGCCGATT
GCGCTGAACA TGGTGGCGGA AATCGCCCGC GACCCGGAAA CCTACGGCCT GCCGATCTCA
GGCATCGGCG GCATCACCAC CTGGCGCGAT GCGGCAGAGT TTTTGGCGCT CGGCGCTGGC
AATGTACAGG TCTGCACCGC CGCCATGACC TATGGCTTCA AGATCGTTGA GGAAATGATC
ACAGGCCTGT CCGACTGGAT GGATGCCAAG GGTCACGCAT CGCTGGATGA CATCTGTGGC
CGCGCCGTTC CCAATGTCAC CGACTGGCAA TATCTCAACC TCAACTATAT CGCCAAGGCG
CAGATCGATC AGGATGCCTG CATCAAATGT GGCCGCTGTC ATATCGCATG CGAGGATACG
TCTCATCAGG CAATCACCAG CATTGTCGAT GGTGCGCGCA AGTTCGAGGT GATGGAAGAC
GAATGCGTCG GCTGCAATCT CTGCGTCAAC GTCTGTCCGG TCGAAAACTG CATCACCATG
GTTGGGCTTG AACCCGGCAT GCTGGACCAG CGCACTGGCA AGCCAGTCGA TCCGAACTAT
GCCAACTGGA CGACACATCC CAATAATCCG ATGGCGGTGC AGGCAGCGGA ATAA
|
|---|
| Protein sequence | MADIRNNFVG IKSPNPFWLA SAPPTDKAYN VERAFKAGWG GVVWKTLGSE GPPVVNVNGP
RYGAIWGADR RLLGLNNIEL ITDRPLQVNL QEMKMVKMNW PDRALIASIM VPCEEEEWRA
ILPLVEETGA DGIELNFGCP HGMSERGMGA AVGQVPEYIE MVVRWCKQYS RMPVITKLTP
NITDIRKPAR AAKAGGTDAV SLINTINSIV SVDLDSFAPN PSVGGKGSHG GYCGPAVKPI
ALNMVAEIAR DPETYGLPIS GIGGITTWRD AAEFLALGAG NVQVCTAAMT YGFKIVEEMI
TGLSDWMDAK GHASLDDICG RAVPNVTDWQ YLNLNYIAKA QIDQDACIKC GRCHIACEDT
SHQAITSIVD GARKFEVMED ECVGCNLCVN VCPVENCITM VGLEPGMLDQ RTGKPVDPNY
ANWTTHPNNP MAVQAAE
|
|---|
| |