Gene Avi_3296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3296 
Symbol 
ID7387458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2724795 
End bp2725457 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content60% 
IMG OID643652186 
Productchloramphenicaol phosphotransferase protein 
Protein accessionYP_002550370 
Protein GI222149413 
COG category[V] Defense mechanisms 
COG ID[COG3896] Chloramphenicol 3-O-phosphotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGCTGG ACACAGAGCG GGAGATCGGT TCGGCGGGAC AGATCCTGAT CCTGAACGGC 
GCACCGCGTT CCGGTAAGTC CAGCATTGCA AAGGTGGTGC TGGACAGTTT TCCGGGCCTC 
TGGGTCAATC TTGGCGTTGA TGCACAGATG GCCACGATCA GCGAACAACA CAGGCCCGGC 
ATCGGCCTGC GGCCGGGGGG CGAGCACCCG GAAAAAGAAG CGGTCGTGCA GCAACTATAT 
GCCGCCCTGC ATGAAACGAT TGCCGCCCAT AGCCGGCTCG GGATCAATGT GGTGGTCGAT 
GTGGGCTATC ACCAGGCCTA TTCGCGGCCT CTGCATATCC TGGATGATTG TGCGCGGCGG 
CTGGCTGGCC TGCCGGTGCT GTTCATTGGT GTGCATTGCG CGCTCACGAC AATCATGGCC 
CGCCGGGCCG CGTCCCCCTC GAATGGCACA ATAAATTATT TGCAAGGCTC AGCGGACGAT 
CCAGTGCCGG AACCCGTACA ACGCTGGCAA ATGGCTGTGC ATGAGCACGG CCCCTATGAT 
CTGGACGTCG ATACCACAGA CAAGACGCCT GAAGATTGTG CTAGAGAGAT TCTGACATTG 
CTGGCTAAGG ATCGCCCACA GCCCAGCTTT TTCGAGCGGC GTTTGTCGCT CATCCAGACC 
TGA
 
Protein sequence
MRLDTEREIG SAGQILILNG APRSGKSSIA KVVLDSFPGL WVNLGVDAQM ATISEQHRPG 
IGLRPGGEHP EKEAVVQQLY AALHETIAAH SRLGINVVVD VGYHQAYSRP LHILDDCARR 
LAGLPVLFIG VHCALTTIMA RRAASPSNGT INYLQGSADD PVPEPVQRWQ MAVHEHGPYD 
LDVDTTDKTP EDCAREILTL LAKDRPQPSF FERRLSLIQT