| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3254 |
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| Symbol | vgrG |
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| ID | 7388172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2689885 |
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| End bp | 2692017 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643652157 |
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| Product | vgrG protein |
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| Protein accession | YP_002550341 |
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| Protein GI | 222149384 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGACG ATATATTGAC TGCCGATTTC ATTCAGGCCA GCCGTGTCTT GAAAGTCTCC
TCCCCACTGG GTGAGGATCA ATTGCTGCCG GAGCGGATGA AGGTAGATGA GGGCGTCAAT
CGTCTGTTTG AAATCACTCT GCATGTCCGC GCCAAGCGTG AAGCGGTCAA ACCGGAAGAG
CTTATCGGTA AGCTGGTCGA TATTTCCCTG GAAATCCGCC AGGGCGAGTT GGGCGAAGAT
GGCCTGCGCC GCCCGTTCAA TGGCTTGGTG ACCGATCTTG AGGAAGGCCC GCCGGTCACA
CGTGGGTTAC GCTCCTACAC GCTCACCATC CGTCCGCAGA TGTGGCTGCT GTCACGCCGC
TCCGATTGCC GGATCTGGCT GGATATGACA TCGATCCAGG TGCTGGAAAC GTTGTTTTCC
GAACATGGCC TGCCGCAGCC GGATATCGGC TTTCTACAGA ACAAACCACC GGCACAAGGC
TATTCTGTCC AATGGCAGGA AAGTGACCTC GACTACTTGC TTCGCCGGTT GGAAGAAGAT
GGAATTTTCT ATTGGTTTCA ACATGATAAG GGCATTCATC GCCTGAGAGT GACAGACCAC
CAGATTGCCT GGTCAAAGGC CTCGGCCAGC GCGGAAGGCG ATGACACCGT GCGGATCGCC
CAAGGCTCTT CCGACCGCAA CCACATCACC GAATGGATGC GGCGCTTCAG TTATGTCCCC
GGCCAGCGCG TCGATGCCGA CTGGAATTTT GAAACGCCGA ACTTCATTCC GCGCTCGCAA
ACGCCCTCTC TCGTGGAGTT GCCGGGCAAT GCCAAGCGCG AGCTTTACAA CTACCCCGCC
CGCGCCGCCG ACTACCTCGA AATGGAGCGT GTCGGCAAAT TGCGCGCTCA GGCGACCCAG
GCGGATCACG AACGGGTCAA AGGCCAATCG ACTGTGCGTG TGCTGGAGCC GGGACGACGC
TTCAACCCCT ATGAAGAACC CCACCCGGAA CACAAATACG AAGAGCATGT GATTACCCGG
ATCACCCATT GGGTGGTGGA TCGCTCCTAT GAAACCACGG AAAATCAGCC GGAATATATC
AACGAATTCG GGGCTATCCC CTCGCGCATC CCCTTAACCC CGCATCGCAC CACCAAACGC
CCCCGCATCG AAGGCGCGCA GGTGGCCATT GTCGCAGGCC CCTCGGGGGA AGAAATTCAT
CCGGATAAAT ACGGCCGGAT CAAAGCCTGG TTCCCCTGGG ATAGACGCGC CAAAAAGGAC
GGCTCCGACA CCTGCTGGAT CCGCGTTTCC CAAAGCTGGG CCGGCGGCCT CTGGGGCTCC
CAGGTCATCC CCCGCATCGG CATGGAAGTG ATGATCGCCT ATATCGACGG CGACCCTGAC
AGACCGCTGG TAACAGGCGT CGTGCCGAAT ACGAACAACC CGGTGCCGTA TGATTTGCCG
GCGAATAAGA CTCGGAGTGT GTTTAAGACA AAAACACATA AGGGCTTTGG CTCAAACGAA
ATCCGCCTTG AAGATGAAAA CGGCCGAGAG GAATTTTACA TCCATGCTCA ACGCGATAAA
AATATTGTAA TTGAAAACGA TTTTACGAAA ATTATAAAAA AAGATTCAGC AACAAAGGTT
GAAAGAGATA GTTCAGACAT CGTCACAAAC AACAAATCCT CCTATACAGG TGGAAATCAT
GAAATAAACG TTGGCGGAAA TATAAATATA TCCGCCGGAA ACTACTCGAA CATACAGCAA
ATTGTAAAAA AAATAAACTA CAGTGGCGAC AAAATTGGAA AATTTATAAA GAGATTAAGC
CTTCCTCGCC ATCAGAGCGT AGGTCAAGGA TCTCTCAACA TTTCCGTGCA GAACACCAAA
ATGGAAACAG TCGGAGTCAA TTCAACTGAA TTGATTGGAG GCATAAAAAG TCAATTCGTT
AAATTTGTTA GCCGAATCCA AGTTGGCCGC GACTATATTA TAGCCGTAGG CCATGAGCAC
CACGAGGTAG TAGGAAAGAT ACGCACAATT AAGTCGGGCG AAAAAATATC CTTAATATGC
GGAAATTCTA GAATTGAGAT GACAGAAGAT GGATCAATCC TAATTGAAGG CAATCAGATA
AAAATTAAAG GCGATAAAAT AAATCTAAAT TGA
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| Protein sequence | MFDDILTADF IQASRVLKVS SPLGEDQLLP ERMKVDEGVN RLFEITLHVR AKREAVKPEE
LIGKLVDISL EIRQGELGED GLRRPFNGLV TDLEEGPPVT RGLRSYTLTI RPQMWLLSRR
SDCRIWLDMT SIQVLETLFS EHGLPQPDIG FLQNKPPAQG YSVQWQESDL DYLLRRLEED
GIFYWFQHDK GIHRLRVTDH QIAWSKASAS AEGDDTVRIA QGSSDRNHIT EWMRRFSYVP
GQRVDADWNF ETPNFIPRSQ TPSLVELPGN AKRELYNYPA RAADYLEMER VGKLRAQATQ
ADHERVKGQS TVRVLEPGRR FNPYEEPHPE HKYEEHVITR ITHWVVDRSY ETTENQPEYI
NEFGAIPSRI PLTPHRTTKR PRIEGAQVAI VAGPSGEEIH PDKYGRIKAW FPWDRRAKKD
GSDTCWIRVS QSWAGGLWGS QVIPRIGMEV MIAYIDGDPD RPLVTGVVPN TNNPVPYDLP
ANKTRSVFKT KTHKGFGSNE IRLEDENGRE EFYIHAQRDK NIVIENDFTK IIKKDSATKV
ERDSSDIVTN NKSSYTGGNH EINVGGNINI SAGNYSNIQQ IVKKINYSGD KIGKFIKRLS
LPRHQSVGQG SLNISVQNTK METVGVNSTE LIGGIKSQFV KFVSRIQVGR DYIIAVGHEH
HEVVGKIRTI KSGEKISLIC GNSRIEMTED GSILIEGNQI KIKGDKINLN
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