Gene Avi_3106 details

Gene Information

• Locus tag: Avi_3106
• Symbol: dnaG
• ID: 7388652
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2580657
• End bp: 2582693
• Gene Length: 2037 bp
• Protein Length: 678 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652056
• Product: DNA primase
• Protein accession: YP_002550240
• Protein GI: 222149283
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0358] DNA primase (bacterial type)
• TIGRFAM ID: [TIGR01391] DNA primase, catalytic core

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.529982
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGATTTT CAAACGACTT TCTCGACGAG ATCCGCGACC GCGTGCCGAT TTCGGCCGTG 
ATTGGCGCGC GCGTGCCGTG GGATCGCAAG AAAACCAACG TGTCGCGCGG GGATTACTGG 
GCCTGCTGCC CGTTTCATGG TGAAAAAAGC CCGAGCTTTC ACTGTGAGGA TCGCAAGGGC 
CGTTACCATT GCTTCGGCTG CGGTGTGTCC GGCGATCACT TTCGCTTTCT GACCGATCTG 
GAAGGCCTGA ACTTTCCAGA AGCCGTCGAG CGGATTGCCG ACATGGCCGG TATCGCCATG 
CCCAAGGTGG ATGCGCGCGA CATAGAGCGT GAGCGCGAGC GCACCAGCCT TCAGGACGTC 
ATGGAAATGG CCACGCTGTT TTTCCAGGAT CAGTTACAGG CAGCCCAGGG TGCCAAGGCC 
CGGGCTTACC TTCGGGAGCG TGGCCTGTCG GGCCGCACCA TCGAGACCTT CCGACTGGGC 
TATGCGCCGG AAAGCCGCAA TGCGCTGAAG GAACATCTGG CCGGAAAAGG TGTGCCGAAG 
GAGCAGATCG AGGCCTGCGG GCTGGTGGTG CATGGGCCGG ATATTCCGGT ATCCTATGAC 
CGTTTCCGCG ACCGGATCAT GTTTCCGATT CTGTCGTCCC GCGACAAGGT GATTGCGTTT 
GGCGGACGGG CGATGTCGCC GGATGCACCG GCCAAATATC TGAATTCCAA CGAGACGGAA 
CTGTTTCACA AGGGCAATGT CCTCTATAAT TACTCCCGCG CCCGGCGGAC GCTTCAGGGC 
GCCGATGGGG CAGAGACGAT CATTGCCGTC GAAGGCTATA TGGATGTGAT CGCGCTCTAT 
CAGGCGGGCG TGGAAAATGC CGTTGCGCCG CTGGGCACGG CGCTGACTGA AAACCAGCTG 
GAACTGATGT GGAAAATGAC GCCGCAGCCG GTGCTGTGTT TCGATGGCGA TGGCGCTGGG 
CAACGCGCGG CGTTTCGCGC CGTTGATCTC GCCCTGCCGC ATCTGAAGCC CGGAAAAAGC 
GTCCGCTTTG CCATGCTGCC GGATGGCAAG GACCCTGATG ATCTGGTCAA GCAGGATGGT 
CGCGCGCCCT TTGACCGGGT ATTGGCCGAG GCCCGCTCTC TGGATGAAAT GGTCTGGCTG 
CGCGAAACCG GCCAGGGTCG CTTTGACACG CCGGAGCAGC GCGCCGAGCT TGAGGCGCGG 
TTAAAGCAGA TCGTCAATAT CATTGCCGAT GAGAATGTGC GCCGCCACTA TCAGCAGAAT 
GTCAGGGACC GGCTCTATGG GTTCTTCCAG GGGCGGGGGC AGGGGCAGGG CGCTGGCCGT 
GCCGGGCGCG GCAATTTCGA GCGTGGTGGT GGTGGCTTTA CCGGCAACCG GCCCGGCAAT 
GGCCGTTTTC AAAACAATGC GGGTGGTCGC GGCGCACCGG CTGGCCAGCG TCCCGGCAGC 
ACGATGGCCT CCGACCGGCT GACGCGGTCG GGCATGGTCA GCCGCAGCCA TGACCAGCCC 
AGCCTGCGCG AAAGCGTGCT GGCGCTGACC ATCGTCAATC ATCCGCAATT GTTGCAGGAG 
GATTATGACG AGATTTCCTG CATCGATTTC GACAGCCGTG ATCTGCAAAG GCTTTGGCCT 
GCGGTGCTGA CCGCTGTTGC GCAAACCGGG GCGCAACTGA CCCGTGAGGA TCTATATGAG 
CGGTTGATGT CGGGCGGTTT CGATGCGCTG TTGAAGGCGC TGGACCAGCA GATCCGCAAT 
GCCAGGCTGT GGACGGCAAC CACGGTGGCG GCGCTGGAAG ATGCCCGCGA GGGCTATACA 
CAGGCGCTGT CATTGCATAA GCGCGCCAAG GCGCTGCGCC GCCAGCGCAT CGAACTGGAA 
CGTGAGATTG CCGAGGCGAC CGAGGCGGAT GATGCCGGGC GGATCGACGG GCTGATGTCG 
GTTTTGCAGG AAGTGCAGCT GGAAATCGTT CGGATGGAGA ACCAGGAAGC GATCATCGAT 
GGCTTTGGCG TGATGTCGGG CCGTGTCAAG GGACCGGCTT ATGGTCACAA TTCATAA 

 

Protein sequence

MRFSNDFLDE IRDRVPISAV IGARVPWDRK KTNVSRGDYW ACCPFHGEKS PSFHCEDRKG 
RYHCFGCGVS GDHFRFLTDL EGLNFPEAVE RIADMAGIAM PKVDARDIER ERERTSLQDV 
MEMATLFFQD QLQAAQGAKA RAYLRERGLS GRTIETFRLG YAPESRNALK EHLAGKGVPK 
EQIEACGLVV HGPDIPVSYD RFRDRIMFPI LSSRDKVIAF GGRAMSPDAP AKYLNSNETE 
LFHKGNVLYN YSRARRTLQG ADGAETIIAV EGYMDVIALY QAGVENAVAP LGTALTENQL 
ELMWKMTPQP VLCFDGDGAG QRAAFRAVDL ALPHLKPGKS VRFAMLPDGK DPDDLVKQDG 
RAPFDRVLAE ARSLDEMVWL RETGQGRFDT PEQRAELEAR LKQIVNIIAD ENVRRHYQQN 
VRDRLYGFFQ GRGQGQGAGR AGRGNFERGG GGFTGNRPGN GRFQNNAGGR GAPAGQRPGS 
TMASDRLTRS GMVSRSHDQP SLRESVLALT IVNHPQLLQE DYDEISCIDF DSRDLQRLWP 
AVLTAVAQTG AQLTREDLYE RLMSGGFDAL LKALDQQIRN ARLWTATTVA ALEDAREGYT 
QALSLHKRAK ALRRQRIELE REIAEATEAD DAGRIDGLMS VLQEVQLEIV RMENQEAIID 
GFGVMSGRVK GPAYGHNS