| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3001 |
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| Symbol | |
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| ID | 7386161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2508307 |
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| End bp | 2509203 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651989 |
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| Product | major head subunit protein |
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| Protein accession | YP_002550173 |
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| Protein GI | 222149216 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4397] Mu-like prophage major head subunit gpT |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.751279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGATCA CTCGTCAATC TCTCCAGTCG GCTTTCGTCG GCTTTAATAC CGCCTTTCAA
GCGGGCCTCG CGATGTCAAC GCCGCAATGG TCTCAGGTCG CGACCTTGGT ACCATCGACC
ACCAAGACCC AGGAATACGG CTGGCTCGGT CAGTTTCCAG GCATGCGCGA ATGGATCGGC
GACCGGGTCG TCAATGGTCT GGCCCGTCAT GGTTATGCGC TGACCAATAA GTCCTACGAG
ACGACGATCG GTGTCGATCG CGATGACTTC GAAGACGACA ATCTCGGCAT CTACGGGCCG
ATGTTCAAAC AGCTTGGCCA GAATGCCACG ATGTTCCCTG ACGAACTGGT GTGGGGTCTT
GTCAAGAACG GCTTTGCCAC CAAATGCTAC GATGGCCAGT ATTTCTTCGA CACGGACCAT
CCTGTCCTCG ATGCTGCTGG CAACGTGACC TCTGTCGCCA ACACGGATGG CGGAACGGGT
ACTGCCTGGT TCCTGGTCGA CAATAGCCGT GCCTTAAAGC CGTTGATTTA CCAGCAGCGC
AAGCCCTTCA GTAATCTGAT CCGCAAGGAC CAGGAGAGTG ACGACAACGT CTTCTTCAAG
AAGGAATACG TCTACGGCCT GGATGGCCGC TGCCAGGTTG GTTTCGGCTT CTGGCAACAG
GCCTGGGGTT CGAAGCAGAC CCTTAACGCT GCGAACTACG AAGTGGCGCG CGTCGGTCTC
GGCAGCCTGA AGGCTGACTA TGGCAAACCG CTGGCCATCA ATCCGCGTCT GCTCATCGTG
CCGCCGTCTC TGGAAGGGGC GGCCCGTAAG ATCGTCGGCA ACCAGCTCAC CGACAATGGC
GGCACCAACC AGTGGTACGG CACGGCCGAG GTACTGGTCT GCCCCTATCT CGCCTGA
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| Protein sequence | MLITRQSLQS AFVGFNTAFQ AGLAMSTPQW SQVATLVPST TKTQEYGWLG QFPGMREWIG
DRVVNGLARH GYALTNKSYE TTIGVDRDDF EDDNLGIYGP MFKQLGQNAT MFPDELVWGL
VKNGFATKCY DGQYFFDTDH PVLDAAGNVT SVANTDGGTG TAWFLVDNSR ALKPLIYQQR
KPFSNLIRKD QESDDNVFFK KEYVYGLDGR CQVGFGFWQQ AWGSKQTLNA ANYEVARVGL
GSLKADYGKP LAINPRLLIV PPSLEGAARK IVGNQLTDNG GTNQWYGTAE VLVCPYLA
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