| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2928 |
|---|
| Symbol | mcpC |
|---|
| ID | 7386108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2445901 |
|---|
| End bp | 2448279 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643651935 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_002550120 |
|---|
| Protein GI | 222149163 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCTA TCCGGAACGT TCTGGTTTCA GTTTTTCTTA TTATCAGCAT TGCCTTGGGC
GCCATGGTGT CGCGATCGCT CTATGTCGCT TACAACCAGT TCGGTGTGTT CCGCGATGTC
GCAAAACTGA CGGCGGTTAA TAAGGCGCTG TTTGATTTTC TGTTGAATTA CCGCCTGGAG
CGCGGCCATA CCAACACCGT CTTTATGACA AGCCCGGAAA AGGCTGGAAC GACTGCCAAG
GATGTTCCTG TCGACCGCCA GAAGGTCGAC GCGGCGATGA AGGATTTTAC CGCAGCGGTC
ACCGTTGTCG GTACGCCAGA ATTCGCGGCG ATGTTGAACA AGATCAAAGG ACATTACGAC
ACGATCGTCT CGATGCGCCA GCCGCTTGAT GCGCAGTTTT CCCTTCCTCT GGAAAGTCGC
AATAAGGAGT TGAATGCAAA GCAGCTTTCG TATGGCGATA GCGTGCTTGA TGATCTTGAA
AAAAGCTCGG TTTTTACCGA ATCCGCCATT CGTTCGCTGG ATAACAGCCT GACAGATCTT
TTGCAGGTCA GGACCAATGC ATGGGTAACC CGCTCAGCGG CCGGAGCGGA AAACATCCTG
CTCAACAAGG CTATCGCTCT GCAAACACCT CTCGCTATGC CTGATGTTCT TGAGGTTGCG
AACCAACATT CAAAAATCAT CACCGGCTGG CTTCAGGTTC GCGCACTCGT CAATCATTCG
ACGATGCCGG AAGAATTGAA ACAGGCGCTT AGCAAGGCTG AATCAGTCTA TTTTGGTGGC
GCATTCGCGG ATATGCGCGA TACCCTCTAC AAAAAAGTCG TTGCTCGCGA ACCAGCTGAT
TTGACGCTGG ATCAATGGTT GTCTCCGAGT TCCAAAGCGC AAGCCAGCAT AGCTGATGTC
GTGGTTACGG CCATGAAGGT TGTGAATGAT AAAGCGAATT CGTTGGCTAA CGCCGCATTC
TCCTTGGTTA TTTTGTATAG CGCCTTGCTG GTTGGCTCAA TCCTCCTGAC CATTGCAGGC
ATGGCGATTG TCGTAAGACG CGTTGTTGCT CCCATCGGTA CTCTCACACA GTCCATGCGA
GCCCTTGCCG ATGGCGATAC GCAGAAAAAT ATCCCCTTCA CCATCCGTCA GGATGAAGTG
GGAGCCATGG CCCGCTCGGT TGAGATTTTC CGGGAAGCCG CCATTCGTAA CAAGCAGCTT
GAATCTGAAA CCGAAGAGAT GCGGCACCGT GGTGAGCTTG AACGCATTGA AGTTCAGCGC
GTTGCGGAAG CGGAGGCCGA GGAGCGTCTG AACCGCGCGA CGGGTTCGCT TGCAGCCGGG
TTGAAGCGCT TGGCGTCAGG GGATATGCTC TGTGAAATCC GCGAGGAATT CGCTCCCCGG
TTTGAAGCGC TTCGCCATGA TTTCAACCGC TCTGTCGAGC AATTGCGAAC AGCTTTGCTG
GACGTCGGCA GTGCCGCGCA TGCAGTGCGC AATGGCAGCG GGGAAATCTC CCAGGCGTCC
GACAATCTGT CAAAGCGGAC GGAACAGCAG GCGGCCTCCC TGGAGCAAAC CGCCGCCGCA
CTTGAGCAGA TTACCGTTAA TGTCAGGGCA ACGTCGCAAC GCACGAGCGA TGCGCGAGAT
CTGGTGCGCA ATACGCGCAC GCGCGCCGAA CACTCCGGGG CGGTGGTAGG CAATGCGGTC
ACGGCCATGG GGCGTATCGA AGAGGCCTCC TCAAAGATTA CCCAGATCAT CAGCGTCATC
GATGAGATCG CGTTCCAGAC CAATCTCCTG GCGCTCAACG CGGGCGTCGA GGCAGCGCGC
GCCGGTGAGG CCGGTAAGGG TTTTGCCGTC GTTGCCCAGG AAGTACGCGA GCTTGCGCAG
CGTTCCGCCA ATGCGGCCAA GGAAATCAAG GCGCTGATTG CCAATTCGGA AGTGGCAGTC
GGCGATGGCG TTAGGCTTGT GAACGATACC GGCAAGGGCC TGAGCGAAAT CGCCGAACTC
GTGCAGGCCA TCAATGCGCA TATGGATGCC ATCGCGACGG CGGCGCAGGA GCAGTCGGTC
GGTCTTAGCG AAGTCAATAC CGCCGTCAAT CACATGGACC ATGCCACCCA ACAGAACGCG
GCCATGGTAG AGGAAATGAG CGCGGCGGGG GCGGGCCTTG CCAGTGAAGC AACCAGGCTT
GCCGACCTGT TGGCAAATTT CGAGACGGGC GGGCAAAAGG CTGGTTTGTC TCTCGCCTCG
ACAGGTGGCG TGCAGCGCTC CACCCGACCG GCTGCGGCAG CCCCGGCCCG TACGGAGCGG
CAGCCAGCCA GCCTCACGCG AGCCAGTCGA CCGGTAGCAA TTCAGAGCCG AGGTAACGCC
GCCGTTGCCG TTTCAAAGGA TGCCTGGGAA GAATTCTAA
|
|---|
| Protein sequence | MFSIRNVLVS VFLIISIALG AMVSRSLYVA YNQFGVFRDV AKLTAVNKAL FDFLLNYRLE
RGHTNTVFMT SPEKAGTTAK DVPVDRQKVD AAMKDFTAAV TVVGTPEFAA MLNKIKGHYD
TIVSMRQPLD AQFSLPLESR NKELNAKQLS YGDSVLDDLE KSSVFTESAI RSLDNSLTDL
LQVRTNAWVT RSAAGAENIL LNKAIALQTP LAMPDVLEVA NQHSKIITGW LQVRALVNHS
TMPEELKQAL SKAESVYFGG AFADMRDTLY KKVVAREPAD LTLDQWLSPS SKAQASIADV
VVTAMKVVND KANSLANAAF SLVILYSALL VGSILLTIAG MAIVVRRVVA PIGTLTQSMR
ALADGDTQKN IPFTIRQDEV GAMARSVEIF REAAIRNKQL ESETEEMRHR GELERIEVQR
VAEAEAEERL NRATGSLAAG LKRLASGDML CEIREEFAPR FEALRHDFNR SVEQLRTALL
DVGSAAHAVR NGSGEISQAS DNLSKRTEQQ AASLEQTAAA LEQITVNVRA TSQRTSDARD
LVRNTRTRAE HSGAVVGNAV TAMGRIEEAS SKITQIISVI DEIAFQTNLL ALNAGVEAAR
AGEAGKGFAV VAQEVRELAQ RSANAAKEIK ALIANSEVAV GDGVRLVNDT GKGLSEIAEL
VQAINAHMDA IATAAQEQSV GLSEVNTAVN HMDHATQQNA AMVEEMSAAG AGLASEATRL
ADLLANFETG GQKAGLSLAS TGGVQRSTRP AAAAPARTER QPASLTRASR PVAIQSRGNA
AVAVSKDAWE EF
|
|---|
| |