| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2843 |
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| Symbol | gcd |
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| ID | 7385962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2364705 |
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| End bp | 2367038 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651871 |
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| Product | glucose dehydrogenase |
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| Protein accession | YP_002550056 |
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| Protein GI | 222149099 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.48538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTCA TCGTTACAGC GGTCGTCTTC GCCGTCATCG GGCTCGCGCT CGGCGGCGGG
GGCGGCTATC TCCTGTCGCT CGGCGGTAGC CCGTTTTACC TCATCGCCGG TATCGCCTTC
ATCCTCGTTG CGCTGCTGCT GGTGATGCGC AAGGCGTCGG CGCTTTGGAT CTACGGGCTG
TTCATTCTCG GCTGCCTGGG CTGGGCGATC TGGGAGGTCG GCTTTGACTG GTGGCAGCTT
GGTACGCGCG GCGGGCTGGT CATCGTGCTT GGCTTTGTGC TGCTTCTGCC TGCCATCCGC
CGCAGGCTGG GACCGCTGCA TCGCCGCGAA GGCGGTATTG CCGCCAGCGC CTGGCCAGTG
GCCCTGCCGG TGCTGGTCGC GCTTGTTGTC GCGGGCTATT CGATGACGCA GGACCCCTAT
GACAAGCCCG GCACGTTGCC GATGGATGTG GCCAGCGCCA CACCGTCCTA TGGCGGCGAC
ATGGCCGATG GCGAATGGCA CCAATATGGC CGCACGCCTT ATGGCCAGCG CTATTCGCCG
CTCACCCAGA TCACGACCGA CAACGTCAAG ACGCTGAAGA CGGCCTGGAC CTACCAGACC
GGCGATGTGA AACAGCCCGG CGATGTCGGC GAGACCACCT ATCAGGTAAC GCCGCTGAAA
GTGGGCGATA CGCTTTATCT CTGCACCCCG CACAATTGGG CCATCGCCGT GGATGCGGCG
ACCGGCAAGC AGAAATGGAA ATATGATCCC AATGTCGGAC TGAACCCGGA TCGCCAGCAC
CAGACCTGCC GTGGCGTCAC CTATTATGCC GATCCTGCTG CCACAGCCGG TGCGTCCTGC
GCCACCCGCG TCTATCTTCC GACCTCGGAT GCGCGGCTGA TCGCGCTTGA TGCCGCCAAT
GGCAAGATCT GCGAAAGCTT TGCCGACAAG GGCGTGCTGC ATCTGGAACA GGGCATGCCC
TACAATCCGG CTGGCTATTA TTACTCGACC TCGCCGCCGG TGATTGCCGC TGGCAAGATC
ATCATTGGCG GAGCGGTCAA CGACAATTAT TCCACCAAGG AGCAATCCGG CGTGATCCGC
GCCTTCGACG TCCAGACCGG CGCGCTGGTG TGGAACTGGG ACAGCGGCAA TCCGGGTCAG
ACCCAACCGC TTCCGCAAGG CCAGACTTAC ACCGCCAATT CGCCGAATAG CTGGTCGGTA
TTCTCGGTCG ATGAACAGCT GGGCCTCGTT TATATCCCGC TCGGCAATCA GGTGCCGGAC
CAGTTGGGCA TGAACCGCAG CGCCAATGTG GAAAAATATT CTTCCTCGGT CGTGGCGCTC
GATCTCAACA CCGGTGCCGA TCGCTGGGTG CAGCAATTCG TCCATCACGA TCTCTGGGAC
ATGGATGTTC CCGCCCAGCC CGTGCTGCTC GATATCAACA GCGGTGGCAC CACTGTTCCG
GCGCTGGTTG CCTCCACCAA GCAGGGCGAT GTCTATGTGC TGGACCGGCG CACTGGCCAG
CCGATCATTC CGATCAAGGA GCTTCCGGCC CCCGGCGGCA CCATCCCGGA AGACCATGCC
TCGCCAACCC AGCCGATTTC GGCCTTAAGC TTCCGCCCAC CGAAGCTGGA AGAGCGCAAT
ATGTGGGGCG TGACGCTGCT TGATCAGCTT GCCTGCCGCA TCAAGTTCCA TCAGTTGCGC
TATGAGGGCC AATATACCCC GCCATCGTTG CAGGGCTCGA TCATCTATCC CGGCAATTTC
GGCACGTTCA ACTGGGGTTC GGTGGCTGTC GATCCGGAAA AACAGGTGAT GTTCGGCATG
CCGACTTATC TGGCCTTCAC CTCACAGCTT GTGCCGCGCG ATCAGGTTCC GGCCAAGGGC
CAGGACGAAA AAGGCTCGGA ACAAGGCCTG AACCGCAATG ATGGCGCACC CTATGCCGTG
AAGATGGGTC CGTTCCTGTC GCCCATCGGC ATTCCCTGCC AGGCACCGCC ATGGGGTACG
GTTGCCGCTG TCGATCTGAA GACCGGCAAG ATCGCCTATC AGCACCGCAA TGGCACCGTG
CATGACATGA CACCGCTGCC GCTGCCCTTC AAGGTCGGCG TACCCGGCAT CGGCGGGCCG
ATGATTACCA AGGGCGGCGT CGCTTTCCTC GGTGCTGCCG TCGATAATTA TCTGCGCGCC
TATGACCTCG CCACCGGCAA GGTTCTCTGG GAAGGCCGGC TTCCGGCTGG CGGCCAGGCG
ACGCCGATGA GCTATGAGCT GAATGGCAAG CAATATGTTG TGATGGTTGC AGGCGGTCAT
GGTTCTGTTG GCACCAAGCC GGGTGATTAC GTGATCGCCT ATACGCTGCC GTAA
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| Protein sequence | MILIVTAVVF AVIGLALGGG GGYLLSLGGS PFYLIAGIAF ILVALLLVMR KASALWIYGL
FILGCLGWAI WEVGFDWWQL GTRGGLVIVL GFVLLLPAIR RRLGPLHRRE GGIAASAWPV
ALPVLVALVV AGYSMTQDPY DKPGTLPMDV ASATPSYGGD MADGEWHQYG RTPYGQRYSP
LTQITTDNVK TLKTAWTYQT GDVKQPGDVG ETTYQVTPLK VGDTLYLCTP HNWAIAVDAA
TGKQKWKYDP NVGLNPDRQH QTCRGVTYYA DPAATAGASC ATRVYLPTSD ARLIALDAAN
GKICESFADK GVLHLEQGMP YNPAGYYYST SPPVIAAGKI IIGGAVNDNY STKEQSGVIR
AFDVQTGALV WNWDSGNPGQ TQPLPQGQTY TANSPNSWSV FSVDEQLGLV YIPLGNQVPD
QLGMNRSANV EKYSSSVVAL DLNTGADRWV QQFVHHDLWD MDVPAQPVLL DINSGGTTVP
ALVASTKQGD VYVLDRRTGQ PIIPIKELPA PGGTIPEDHA SPTQPISALS FRPPKLEERN
MWGVTLLDQL ACRIKFHQLR YEGQYTPPSL QGSIIYPGNF GTFNWGSVAV DPEKQVMFGM
PTYLAFTSQL VPRDQVPAKG QDEKGSEQGL NRNDGAPYAV KMGPFLSPIG IPCQAPPWGT
VAAVDLKTGK IAYQHRNGTV HDMTPLPLPF KVGVPGIGGP MITKGGVAFL GAAVDNYLRA
YDLATGKVLW EGRLPAGGQA TPMSYELNGK QYVVMVAGGH GSVGTKPGDY VIAYTLP
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