| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2681 |
|---|
| Symbol | exoR |
|---|
| ID | 7388348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2219407 |
|---|
| End bp | 2220222 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643651749 |
|---|
| Product | exopolysaccharide production negative regulator |
|---|
| Protein accession | YP_002549936 |
|---|
| Protein GI | 222148979 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0471275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGG TTTACGGTAA TCAGGGGCGG ACAATCGGAC AGTCTTCAGC CTTTCTGCTG
CTGTCATTGG CGCTCGGTAA TCTGTTTTAT ACGGGCTGTG CCCATGCATT CGACTTCAAG
GCCGGTGTCT CCAAGGAGTC CGGTCCCTTC GATCTGTTCA AGTTCGGCTT CAACGCTCAA
AAGAGCGGCA AGACGCAGGA TGCCGTTGAA GCCTATCGGT ATGCGGCTGA AAAAGGTCAT
ACCGGATCGC GCTGGGCGCT GGCCAATATG TATGCCGATG GCGATGGCGT CGTCAAAAAC
GATTATGAAG CCTTCAAGAT TTATTCCGAA ATTGCCAACC AGGGTGTAGA GCCGGGCTCG
GAAGACACGG TCTATTTCGT TAATGCGCTG ATCTCGCTTG CCAGTTATTA TCAGCAGGGC
ATTGCCGGCA GCCCGGTTAA GTCCGATCTG GTCCAGGCCC GTCAGCTTTA TTTTCAAGCG
GCGTCCGCCT TTGGTTTCCC GGAGGCCCAA TTCGAACTGG CGAAAATGCT GCTAGCGGGC
GAGGGCGGCA AACGCAACGT CCAGCAAGCC AAGAAATGGC TTAACCTTGC TCGGAAGAAC
GGCCATGCGG GCGCCATGGC GCTATTTGGC GATGTGATTT TCGAAGAAGG ACAGGCAGCC
CGTGGCCTCG CCTTCCTGAC GGCGGCGCTT GATAAATGTG CGCCGAAGGA TTGTCCGTGG
ATCGAGGATC TCCAGGAGCG CGCCTTCTCG CTTGCCGATG AAAAGGATCG CCGCGTTGCC
GTGGCGCTCG TGCCGCAGGT GCAGGAACAG CCCTGA
|
|---|
| Protein sequence | MFKVYGNQGR TIGQSSAFLL LSLALGNLFY TGCAHAFDFK AGVSKESGPF DLFKFGFNAQ
KSGKTQDAVE AYRYAAEKGH TGSRWALANM YADGDGVVKN DYEAFKIYSE IANQGVEPGS
EDTVYFVNAL ISLASYYQQG IAGSPVKSDL VQARQLYFQA ASAFGFPEAQ FELAKMLLAG
EGGKRNVQQA KKWLNLARKN GHAGAMALFG DVIFEEGQAA RGLAFLTAAL DKCAPKDCPW
IEDLQERAFS LADEKDRRVA VALVPQVQEQ P
|
|---|
| |