| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2518 |
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| Symbol | |
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| ID | 7385882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2078690 |
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| End bp | 2079811 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643651625 |
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| Product | zinc metallopeptidase |
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| Protein accession | YP_002549813 |
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| Protein GI | 222148856 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.436086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGTTA TCGGTTTCCT GACGGGTTAT ATCATTCCCT TCGTTCTGGT CCTGTCGCTG
ATCGTTTTCG TGCATGAAAT GGGCCATTAT CTGGTTGGGC GCTGGTCGGG TATCAAGATT
CTCGCATTCT CGTTGGGATT TGGCCCGGAA CTGGTCGGCT TCAATGACCG CCACGGCACG
CGCTGGAAAC TGAGCGCCAT TCCGTTGGGT GGCTATGTGC GCTTCTTCGG TGATGCCGAT
GCGTCCAGCA AGACCGATAC CGCGGAGTTT GAGGCGCTGA GCCCTGAGGA TCGCGCCCGC
ACGCTGAATG GTGCAAAATT GTGGAAAAGG GCAGCCACTG TTGCCGCCGG GCCAATTGCA
AATTTCCTGC TGGCAATTTT AATTTTCTCG GTCACATTCA GCCTTTATGG AAAGCCCGTT
TCCGATCCTG TCGTGGCAGA GGTCAAGCCT GCGAGTGCGG CGGCTGAAGC CGGTGTGCAG
CCCGGAGACA TTCTGGTGGC GCTCGATGGC AGCAGCGTCA AGACCTTCGA CGATGTGGTC
CGCTATGTGA GCGTTCGCCC GCTTGTGCCG ATCGTCGTCA CGGTCAAGCG TGGTGAGTCC
CAGATGGACC TATCAATGAC GCCGCGCCGG ACCGAAACCA TCGACCGTTT CGGCAATAAG
ATGGAAGTCG GCCAGATTGG CATCATGACG ACGGCAGCCA GGGGCAATTT TCGTGTGGAA
AAACTGGGGC TTATCGAATC GGTTAGCGCC GGGGTCGATC AAACCTGGAA TATCGTGACG
GGTACTTATG ATTATCTGGC AAACCTGTTT GCTGGCCGAA TGAATGCTGA CCAGCTGGGG
GGACCTATCA GGGTAGCGCA GGCATCTGGT CAGGTTGCGA CACTTGGTGT TGTAGCTTTG
CTGCAATTGG CGGCAGTTTT GTCGGTTTCC ATTGGGTTAC TGAACCTTAT GCCGGTTCCG
GTGCTTGATG GCGGCCATTT AATCCTCTAT GCGCTAGAAG CAGTACGAGG AAAACCAGTC
AGTGCCGGTG CGCAGGAAAT CGCGTTCAAG GTGGGAATGG TCATGATTCT GTCGCTGATG
GTGTTCGCTA CATGGAACGA CATCAGCAGG TTGATTGGCT GA
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| Protein sequence | MAVIGFLTGY IIPFVLVLSL IVFVHEMGHY LVGRWSGIKI LAFSLGFGPE LVGFNDRHGT
RWKLSAIPLG GYVRFFGDAD ASSKTDTAEF EALSPEDRAR TLNGAKLWKR AATVAAGPIA
NFLLAILIFS VTFSLYGKPV SDPVVAEVKP ASAAAEAGVQ PGDILVALDG SSVKTFDDVV
RYVSVRPLVP IVVTVKRGES QMDLSMTPRR TETIDRFGNK MEVGQIGIMT TAARGNFRVE
KLGLIESVSA GVDQTWNIVT GTYDYLANLF AGRMNADQLG GPIRVAQASG QVATLGVVAL
LQLAAVLSVS IGLLNLMPVP VLDGGHLILY ALEAVRGKPV SAGAQEIAFK VGMVMILSLM
VFATWNDISR LIG
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