Gene Avi_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2416 
SymbolrhtB 
ID7386049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp1989884 
End bp1990516 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content53% 
IMG OID643651542 
ProductRhtB family transporter 
Protein accessionYP_002549731 
Protein GI222148774 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.484393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGATT TTTCTACATT CATGCTTTTT GCCGCGGCCT CATTGGTTCT CACAGCCACT 
CCCGGCCCGG ATATGCTGCT CATTGCATCG CGCAGTGTTA GCCAAGGCCG GTCGGCTGGA 
TTTCTGACAT ATGCGGGCAT TGCCTTTGGT TGCTATTGTC ACGCAACGGC TGCTGCCCTT 
GGACTATCGC AACTTTTCCT CACTGTTCCC GTCGCCTATG AGATCGTGCG TTGGGCCGGC 
TGCATCTATT TGCTGTACCT TGCCTATAAG ACGATACGGT CACAAGGTGC AGGCTTCTCT 
CCTCAATCGT CACTCAAGCG CCTCTCTGGC AAACGCATTT TTACAGAAGG TCTTGCGACC 
AATCTTCTCA ATCCCAAAAT GGCGCTTTTC GTTCTTGCCC TGTTTCCGCA ATTCGTAAAC 
CCGGAACAAG GCTCTCTGCT CGTGCAAATG CTGCTGCTTG CCACGGTCTT GAATGTCATC 
GGAATGTTCG TGAATGGCGT GGTCATCCTC CTCGGCAGCC GGATACGCAA CCATCTTTCA 
TCAGTGCGTC GCTTTCCAAA ACTGCCTCAA TATCTTCTTG CGACGGTCTT TACTGGTTTG 
GCCTGCCGCT TAGCTCTGGG CACGAGAAAC TGA
 
Protein sequence
MPDFSTFMLF AAASLVLTAT PGPDMLLIAS RSVSQGRSAG FLTYAGIAFG CYCHATAAAL 
GLSQLFLTVP VAYEIVRWAG CIYLLYLAYK TIRSQGAGFS PQSSLKRLSG KRIFTEGLAT 
NLLNPKMALF VLALFPQFVN PEQGSLLVQM LLLATVLNVI GMFVNGVVIL LGSRIRNHLS 
SVRRFPKLPQ YLLATVFTGL ACRLALGTRN