Gene Avi_2245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2245 
Symbol 
ID7386343 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp1846266 
End bp1846940 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content57% 
IMG OID643651420 
Producthypothetical protein 
Protein accessionYP_002549614 
Protein GI222148657 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG5661] Predicted secreted Zn-dependent protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.313687 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTGGA TACGTTCAAT GGCCAAAAGA AAAGGCACTC TGGTTTGTGC CGCGCTCGTC 
TCCCGCATGA TCGTCTCCGG CGTGGTACTC GTTGTCATCG GCACGGCAGG CATGGCGCAG 
GCGGAAACCA TTGTCCGCAA ATCAACCGTC TATTTCCCGA TTGGCGGGCG GACAGCGACT 
GATCTCGACC ACGAACTGGA GCGCAAAGGC CCGCACACAG TCAGCACCGG AACCCGCCAC 
CCGGGCGCGA CCCGCATCCG TTTTGGCGGC ACCATGGACT ATGTTCGTCA TCGGGGCAGA 
TGTGCCATTG GCAACATCAA GGTGACGGTA TCGATCAAGG TGATTGTGCC ACGCTGGAAA 
AACCGCGGAT CGGCCAATCC GCAACTGGGA TTGATCTGGG ATACGCTATC GGCCGATATT 
AATCGCCACG AATCCCGCCA TGCCGAAATC GCCGTGCAGC ACGCCCGCGA CCTCGATCAA 
AAGTTAAAGG CTCTGCCCAG CGCCACCTCT TGCGAAGAGC TTCAGGAAGC GGTCTCAGTG 
CTGACCGATC AGGTCACGCA GGAACACGAC GCCGACCAGT TGCGGTTTGA CCGCATCGAA 
GCGGTTAATT TCAACGACCG GATCATGAGG CTGTTGAAAT ATCGCTATAC GAAAACGAAA 
GCCCATCACG ACTGA
 
Protein sequence
MSWIRSMAKR KGTLVCAALV SRMIVSGVVL VVIGTAGMAQ AETIVRKSTV YFPIGGRTAT 
DLDHELERKG PHTVSTGTRH PGATRIRFGG TMDYVRHRGR CAIGNIKVTV SIKVIVPRWK 
NRGSANPQLG LIWDTLSADI NRHESRHAEI AVQHARDLDQ KLKALPSATS CEELQEAVSV 
LTDQVTQEHD ADQLRFDRIE AVNFNDRIMR LLKYRYTKTK AHHD