Gene Avi_2172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2172 
Symbol 
ID7387887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1787764 
End bp1788471 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content58% 
IMG OID643651368 
Producthypothetical protein 
Protein accessionYP_002549562 
Protein GI222148605 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.353364 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGATA AACCAGAACG AATTTCTTTT GCCAGCCGGC TAAGGACCAA TTTCCTGACC 
GGCATGATCA TCTGTGCGCC CTTGGCGATC ACCGTCTGGC TGACCTTTAC CTTCATCGAT 
TGGGCGGATA GCTGGGTCAC GCCCTATATT CCGCAGCGCT ACAATCCGGA ATATTACTTC 
AATATCGCCA TTCCCGGCAC CGGCCTGGTG ATTGCGGTGG TCGGCATCAC CATGATCGGC 
TTTCTGGGGC GCAATCTCGT CGGGCGATCT GTCGTCAATT TCGGGGAGTC GATCCTCAAC 
CGGATGCCGC TGGTCCGCAC CCTCTATAAA AGCCTGAAGC AGATTTTTGA AACGGTGCTG 
AAGGAACAGT CCAGTTCCTT CAAGAAGGTC GGGCTGATCG AGTTCCCGGC TCCCGGCACC 
TGGGCCATGG TGTTTATCGC AACTGAAGTG ACCGGCGAAA TCGCTGCCCG GCTGAACGAG 
GAGGGCGAGG AGATGATTGC TGTCTTCATG CCGCCGACCC CGGTGCCTAC GGCTGGCTTC 
CTGATGTTCG TTCCCCGCAG CCGCCTGAAA TTGCTGGATA TGACGCCGGA AGAAGGCGCC 
AAGCTGCTGA TTTCCGGGGG ATTGGTCATG CCCGCATGGA AACCGGCTTC CGGCACGATT 
GCCATGCCGC CCGTCGTGGA TGTCGCAACG GGAAAAACGG GGCTCTAG
 
Protein sequence
MSDKPERISF ASRLRTNFLT GMIICAPLAI TVWLTFTFID WADSWVTPYI PQRYNPEYYF 
NIAIPGTGLV IAVVGITMIG FLGRNLVGRS VVNFGESILN RMPLVRTLYK SLKQIFETVL 
KEQSSSFKKV GLIEFPAPGT WAMVFIATEV TGEIAARLNE EGEEMIAVFM PPTPVPTAGF 
LMFVPRSRLK LLDMTPEEGA KLLISGGLVM PAWKPASGTI AMPPVVDVAT GKTGL