| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2115 |
|---|
| Symbol | |
|---|
| ID | 7386911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1735361 |
|---|
| End bp | 1736695 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643651320 |
|---|
| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_002549515 |
|---|
| Protein GI | 222148558 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.236662 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCA ATATCACCAT GCCGGCCCTC TCTCCCACGA TGGAAGAGGG CAATCTGGCC
AAGTGGCTGG TCAAGGAAGG CGATACCGTC AAGTCCGGCG ACGTGATCGC TGAGATTGAA
ACCGACAAGG CAACCATGGA AGTGGAAGCG GTCGATGAAG GCGTCGTTGC CAAGATCGTC
GTTGCCGCTG GCACCGAAGG CGTCAAGGTC AATGCGCTGA TCGCCATTCT CGCCGCTGAA
GGCGAGGATG TCTCGGCTGC TGCGGCTGGC GGCGGTGCAT CTGCTCCGGC AAAGGCTGAG
GCACCCAAGG GCGAAGCTCC GAAGGCCGAA ACTCCCGCTG CCAAGGCGGA TGCTCCTGCT
GCGGCCCCCC AGGCCGCTGC TCCGGCAGCC GCCTCCGGTG ACCGTGTATT CTCGTCGCCG
CTTGCCCGTC GTCTCGCCAA GGAAGCCGGT CTTGATCTTA AGGCGATTTC CGGTACCGGT
CCGAAGGGCC GGGTGGTCAA GAGCGACGTC GAAAAGGCTG TCAGCACCGG TGGTGCCAAG
CCTGCTGCCG CTCCGGCTGC GTCTGGCGCT GCACCTGCTC CGGTGCTGGC CAAGGGCATG
TCTGACGACG CCGTGCTCAA GCTGTTTGCC GAAGGTTCCT ACGAGCTTGT GCCGCATGAC
GGCATGCGCA AGACCATCGC CAAGCGCTTG CAGGAATCGA AGCAAACCAT TCCGCATTTC
TACGTCTCCG TGGATTGCGA ATTGGATGCC CTGCTGGCGC TGCGCGCCCA GCTCAACACC
GCCGCTCCCG AAAAGGATGG CAAGCCGGTC TACAAGCTCT CGGTCAACGA TATGGTCATC
AAGGCCATGG CGCTGGCGCT GCGCGATGTG CCGGATGCCA ACGTTTCCTG GACGGATACC
AATATGGTCA AGCACAAGCA TGCCGATGTC GGCGTGGCTG TGTCGATCCC CGGCGGCCTG
ATCACCCCGA TCATCCGCCA GGCCGAGCTG AAGAGCCTGT CCGCCATTTC CAACGAAATG
AAGGATCTGG GCGCACGCGC CAAGAGCCGC AAGCTGAAGC CTGAGGAATA TCAGGGCGGC
ACAACAGCGG TCTCCAACAT GGGCATGATG GGCGTCAAGA ACTTCGCCGC CGTGGTCAAC
CCGCCGCATG CGACCATTCT GGCCGTTGGC GCTGGTGAAG AGCGCGTTGT CGTGAAAAAG
GGCGAAATGA AAATCGCCAA TGTCATGACA GTGACGCTGT CCACCGACCA CCGCGCGGTC
GATGGAGCCT TGGGTGCTGA ACTTCTCGGT GCATTCAAAC GCTACATCGA AAACCCGATG
GGCATGCTGG TGTAA
|
|---|
| Protein sequence | MPINITMPAL SPTMEEGNLA KWLVKEGDTV KSGDVIAEIE TDKATMEVEA VDEGVVAKIV
VAAGTEGVKV NALIAILAAE GEDVSAAAAG GGASAPAKAE APKGEAPKAE TPAAKADAPA
AAPQAAAPAA ASGDRVFSSP LARRLAKEAG LDLKAISGTG PKGRVVKSDV EKAVSTGGAK
PAAAPAASGA APAPVLAKGM SDDAVLKLFA EGSYELVPHD GMRKTIAKRL QESKQTIPHF
YVSVDCELDA LLALRAQLNT AAPEKDGKPV YKLSVNDMVI KAMALALRDV PDANVSWTDT
NMVKHKHADV GVAVSIPGGL ITPIIRQAEL KSLSAISNEM KDLGARAKSR KLKPEEYQGG
TTAVSNMGMM GVKNFAAVVN PPHATILAVG AGEERVVVKK GEMKIANVMT VTLSTDHRAV
DGALGAELLG AFKRYIENPM GMLV
|
|---|
| |